Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 6.4e-48 193.7 97 100.0
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 8.4e-32 140.2 96 72.9
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 9.3e-31 136.7 97 74.2
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.9e-29 131.3 97 71.1
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.0e-25 119.0 96 66.7
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.1e-23 113.2 97 60.8
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.9e-23 112.5 88 63.6
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 9.6e-20 100.1 95 61.1
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.2e-19 97.1 95 58.9
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.4e-18 96.3 104 55.8
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 2.4e-18 95.5 92 57.6
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.0e-18 94.7 95 57.9
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 6.9e-18 94.0 95 56.8
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 6.9e-18 94.0 89 59.6
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 1.2e-17 93.2 95 53.7
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.2e-17 93.2 90 58.9
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.2e-17 93.2 95 56.8
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.0e-17 92.4 95 56.8
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 2.0e-17 92.4 95 55.8
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 2.6e-17 92.0 93 53.8
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 2.6e-17 92.0 95 51.6
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 1.0e-16 90.1 79 62.0
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 4.9e-16 87.8 85 52.9
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 8.4e-16 87.0 84 50.0
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.1e-15 86.7 95 49.5
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.6e-14 81.3 93 51.6
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 6.0e-14 80.9 99 51.5
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 7.9e-14 80.5 88 51.1
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.8e-13 79.3 91 53.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 3.0e-13 78.6 89 50.6
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 3.0e-13 78.6 93 50.5
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.0e-13 78.6 93 50.5
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.0e-13 78.6 76 55.3
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 5.1e-13 77.8 80 53.8
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 6.7e-13 77.4 93 49.5
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.7e-13 77.0 90 52.2
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.1e-12 76.6 89 50.6
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.1e-12 76.6 97 52.6
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.1e-12 76.6 97 50.5
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 1.5e-12 76.3 89 51.7
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.9e-12 75.9 96 49.0
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 1.9e-12 75.9 93 50.5
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.5e-12 75.5 93 52.7
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 2.5e-12 75.5 89 49.4
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.3e-12 75.1 89 50.6
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 5.7e-12 74.3 90 50.0
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 7.4e-12 73.9 97 50.5
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 7.4e-12 73.9 84 46.4
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.6e-11 72.8 84 51.2
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 1.6e-11 72.8 95 49.5
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.8e-11 72.0 89 49.4
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 3.7e-11 71.6 106 43.4
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 3.7e-11 71.6 86 48.8
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 6.3e-11 70.9 81 49.4
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 1.1e-10 70.1 99 46.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.1e-10 70.1 91 47.3
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 1.4e-10 69.7 84 47.6
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.8e-10 69.3 98 45.9
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 2.4e-10 68.9 97 45.4
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 2.4e-10 68.9 68 47.1
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.1e-10 68.2 97 46.4
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 4.1e-10 68.2 62 53.2
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 4.1e-10 68.2 106 44.3
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 4.1e-10 68.2 88 51.1
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 5.3e-10 67.8 82 45.1
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 5.3e-10 67.8 79 50.6
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 5.3e-10 67.8 89 43.8
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 5.3e-10 67.8 100 48.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 6.9e-10 67.4 96 47.9
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.2e-09 66.6 94 45.7
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 1.5e-09 66.2 99 47.5
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 1.5e-09 66.2 94 48.9
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-09 66.2 90 45.6
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 2.0e-09 65.9 95 42.1
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 2.0e-09 65.9 90 47.8
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 2.0e-09 65.9 90 46.7
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 2.0e-09 65.9 98 46.9
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.4e-09 65.1 99 46.5
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 3.4e-09 65.1 95 46.3
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 4.5e-09 64.7 103 38.8
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 4.5e-09 64.7 103 43.7
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 1.0e-08 63.5 105 39.0
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.3e-08 63.2 105 39.0
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 1.7e-08 62.8 91 39.6
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 2.9e-08 62.0 88 44.3
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 2.9e-08 62.0 84 44.0
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 3.8e-08 61.6 91 42.9
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.8e-08 61.6 55 54.5
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.8e-08 61.6 98 43.9
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 8.5e-08 60.5 105 39.0
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 1.1e-07 60.1 44 65.9
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.1e-07 60.1 99 47.5
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 1.4e-07 59.7 93 40.9
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 1.9e-07 59.3 90 44.4
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 1.9e-07 59.3 83 50.6
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 2.5e-07 58.9 94 42.6
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 2.5e-07 58.9 94 42.6
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.5e-07 58.9 91 38.5
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 2.5e-07 58.9 95 45.3
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 4.2e-07 58.2 80 46.2
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 4.2e-07 58.2 91 44.0
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 5.5e-07 57.8 90 45.6
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 5.5e-07 57.8 90 41.1
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 5.5e-07 57.8 97 44.3
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 5.5e-07 57.8 95 40.0
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 7.2e-07 57.4 45 62.2
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 7.2e-07 57.4 91 45.1
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 9.3e-07 57.0 93 40.9
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 9.3e-07 57.0 91 37.4
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.3e-07 57.0 91 37.4
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.2e-06 56.6 90 43.3
CDE04G1822 Ceratophyllum demersum HOM05D004965 ORTHO05D004401 1.2e-06 56.6 88 46.6
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 1.2e-06 56.6 93 41.9
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.6e-06 56.2 91 37.4
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 1.6e-06 56.2 105 37.1
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.1e-06 55.8 95 43.2
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.1e-06 55.8 48 58.3
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.1e-06 55.8 48 58.3
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 2.7e-06 55.5 112 36.6
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.6e-06 55.1 96 41.7
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 3.6e-06 55.1 106 41.5
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 3.6e-06 55.1 37 70.3
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 3.6e-06 55.1 37 70.3
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 6.1e-06 54.3 90 42.2
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 6.1e-06 54.3 91 41.8
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 6.1e-06 54.3 90 43.3
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 7.9e-06 53.9 96 41.7
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 7.9e-06 53.9 47 53.2


User provided reference genes

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