Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 2.7e-291 1004.6 496 100.0
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.8e-242 842.4 495 82.8
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 2.0e-238 828.9 495 81.0
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 1.7e-237 825.9 531 76.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 1.4e-228 796.2 495 78.8
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 7.7e-222 773.9 495 76.2
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 1.0e-221 773.5 496 75.6
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 2.2e-221 772.3 495 77.0
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 3.8e-221 771.5 495 76.0
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 5.0e-221 771.2 474 78.3
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 8.5e-221 770.4 449 81.1
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.5e-220 768.8 452 80.5
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 9.4e-220 766.9 496 77.0
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.8e-218 762.7 500 74.2
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 5.1e-218 761.1 481 77.3
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 8.8e-218 760.4 495 75.4
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 3.3e-217 758.4 495 74.3
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 7.4e-217 757.3 495 74.9
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 1.3e-216 756.5 500 74.8
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 1.3e-216 756.5 501 75.2
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 2.2e-216 755.7 464 77.4
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 2.8e-216 755.4 451 78.7
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.8e-216 754.6 461 78.1
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.8e-216 754.6 461 78.7
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 8.2e-216 753.8 496 74.0
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.4e-215 753.1 497 75.9
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 1.4e-215 753.1 464 77.4
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.8e-215 752.7 464 77.4
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 3.1e-215 751.9 500 73.2
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 6.9e-215 750.7 526 71.1
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 1.2e-214 750.0 495 75.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 1.0e-213 746.9 480 76.0
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 3.8e-213 745.0 430 80.9
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 5.0e-213 744.6 465 76.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 3.2e-212 741.9 481 75.1
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 4.2e-212 741.5 495 73.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 7.9e-211 737.3 500 71.8
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 1.0e-210 736.9 430 80.9
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.8e-210 736.1 467 76.9
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 2.3e-210 735.7 484 74.2
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.0e-210 735.3 504 71.2
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.0e-210 735.3 497 73.0
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.0e-210 735.3 423 82.0
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 5.1e-210 734.6 496 74.0
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 8.8e-210 733.8 498 72.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 8.8e-210 733.8 446 77.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 3.3e-209 731.9 498 71.9
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 3.3e-209 731.9 450 76.7
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 7.4e-209 730.7 495 71.1
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 1.3e-208 729.9 451 77.2
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 2.2e-208 729.2 459 77.6
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 3.7e-208 728.4 501 73.3
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 4.8e-208 728.0 443 78.3
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 6.3e-208 727.6 443 77.2
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 8.2e-208 727.2 495 71.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 5.3e-207 724.5 423 79.7
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 7.0e-207 724.2 465 76.1
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.1e-207 723.8 426 80.5
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 9.1e-207 723.8 501 72.5
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 9.1e-207 723.8 423 79.7
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 1.2e-206 723.4 470 73.8
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.2e-206 723.4 497 70.6
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 2.0e-206 722.6 466 74.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 2.6e-206 722.2 462 75.5
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 5.9e-206 721.1 423 79.2
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.0e-205 720.3 423 79.0
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 1.3e-205 719.9 472 73.3
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 3.8e-205 718.4 423 80.1
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 2.5e-204 715.7 452 75.4
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.5e-204 715.7 449 76.2
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 7.2e-204 714.1 495 69.7
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 9.4e-204 713.8 422 79.1
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.2e-203 713.4 422 79.9
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 1.6e-203 713.0 495 69.7
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-203 713.0 495 69.7
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 2.1e-203 712.6 426 79.3
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 2.1e-203 712.6 495 69.7
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 8.0e-203 710.7 503 67.8
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.4e-202 709.9 454 76.2
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 8.8e-202 707.2 429 77.6
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 1.5e-201 706.4 497 68.8
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 1.5e-201 706.4 497 68.8
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 5.7e-201 704.5 434 78.6
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.3e-200 703.4 443 76.5
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 3.1e-199 698.7 413 79.4
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 2.2e-197 692.6 403 80.6
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.8e-194 682.9 400 79.5
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.8e-194 682.9 461 71.8
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.1e-191 672.2 376 83.5
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.0e-190 669.5 403 77.9
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.7e-190 669.1 465 70.5
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 1.7e-189 666.4 422 74.6
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.8e-189 665.2 463 72.6
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 5.0e-189 664.8 552 63.4
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.4e-183 646.7 409 75.8
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.3e-181 640.2 496 67.3
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.1e-180 637.1 376 80.1
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 1.6e-179 633.3 443 70.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.9e-176 622.5 445 68.3
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 8.6e-173 610.9 487 63.4
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 8.6e-173 610.9 448 65.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 2.3e-170 602.8 392 73.5
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 4.0e-170 602.1 339 82.9
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 4.9e-168 595.1 388 73.2
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.2e-166 590.5 376 76.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 3.9e-165 585.5 515 56.3
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.2e-161 573.9 498 59.6
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 4.1e-159 565.5 404 67.8
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 4.4e-153 545.4 380 70.5
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 5.4e-151 538.5 458 59.6
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 6.6e-149 531.6 326 78.2
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 1.9e-143 513.5 455 56.3
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 1.0e-125 454.5 254 82.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.2e-119 432.6 295 70.5
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.2e-119 432.6 295 70.5
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 8.2e-115 418.3 390 54.9
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 3.1e-114 416.4 349 61.6
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 8.2e-107 391.7 293 65.2
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 5.5e-103 379.0 264 70.1
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.1e-102 377.1 283 65.0
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.0e-101 374.8 270 68.5
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 9.7e-100 368.2 294 63.6
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.7e-88 330.9 387 45.7
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.8e-88 329.7 206 76.2
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.5e-79 300.4 247 64.8
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 3.6e-78 296.6 335 45.1
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.6e-68 263.8 248 54.8
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 9.2e-66 255.4 581 31.2
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.1e-50 203.4 458 31.9
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.6e-46 190.3 110 80.9
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 5.4e-42 176.4 112 75.0
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 1.7e-40 171.4 113 73.5
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 6.0e-33 146.4 84 82.1
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 4.3e-31 140.2 82 74.4
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 3.1e-21 107.5 58 75.9
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 9.9e-20 102.4 74 67.6
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 9.9e-20 102.4 92 57.6
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 69.6
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 2.2e-19 101.3 69 69.6
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 3.8e-19 100.5 69 69.6
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 4.9e-19 100.1 68 70.6
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 4.9e-19 100.1 69 69.6
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 1.9e-18 98.2 70 67.1
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 3.2e-18 97.4 69 69.6
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.2e-18 97.4 69 66.7
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 4.2e-18 97.1 68 67.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 5.4e-18 96.7 69 66.7
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 7.9e-17 92.8 53 73.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.8e-14 84.3 69 63.8
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 4.0e-13 80.5 87 51.7
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 9.9e-12 75.9 65 63.1
Oeu056605.1 Olea europaea HOM05D001875 ORTHO05D002019 6.0e-09 66.6 60 61.7
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 3.9e-08 63.9 45 66.7
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 3.9e-08 63.9 52 61.5


User provided reference genes

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