Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 4451.7 2213 100.0
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 3553.1 2220 80.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 3548.8 2220 80.9
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 3446.4 2229 78.0
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 3090.4 2235 70.2
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3070.8 2237 71.0
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3013.4 2230 69.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3005.7 2236 69.1
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2994.1 2230 69.1
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2992.6 2220 69.4
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2985.3 2236 68.4
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2969.1 2232 69.0
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2950.6 2221 68.6
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2948.7 2222 68.1
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2945.2 2230 67.9
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2942.5 2235 67.4
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2934.1 2229 67.9
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2929.8 2239 68.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2917.1 2236 67.3
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2912.1 2229 67.6
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2870.9 2258 66.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2865.1 2233 66.7
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2858.2 2238 66.6
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2836.2 2241 65.4
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2827.7 2242 65.4
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2780.0 2225 65.3
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2769.6 2242 65.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2765.3 2229 64.7
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2739.9 2224 64.3
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2737.6 2213 64.3
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2737.2 2238 63.9
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2726.8 2241 63.9
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2724.9 2240 63.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2714.1 2229 63.6
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2702.5 2245 62.9
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2701.0 2239 63.2
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2698.7 2241 63.0
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2684.1 2248 63.1
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2675.6 2242 62.8
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2667.5 2234 62.7
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2661.3 2236 62.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2658.2 2239 62.4
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2655.2 2239 62.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2650.5 2234 62.0
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2650.2 2236 62.3
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2636.7 2241 61.9
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2620.1 2233 62.3
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2616.3 2235 61.3
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2598.9 2230 61.0
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2591.6 2246 61.1
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2587.4 2258 60.3
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2584.3 1831 71.6
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2576.2 2244 60.7
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2575.0 2228 60.0
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2572.0 2233 60.1
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2566.6 2234 60.3
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2565.4 2234 60.7
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2551.5 2240 60.2
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2550.8 2255 60.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2550.4 1907 68.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2535.0 2240 59.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2534.2 1826 70.5
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2507.6 2232 59.4
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2493.4 2261 59.8
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2488.0 2237 60.1
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2476.0 2236 59.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2470.7 2238 57.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2464.5 2234 58.8
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2464.1 2237 59.6
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2462.2 2238 59.4
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2459.5 2238 59.8
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2456.4 1836 69.6
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2233 59.7
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2233 59.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2443.3 2231 59.5
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2441.4 2231 59.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2438.3 2228 59.6
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2438.3 2228 59.6
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2420.2 2246 57.2
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2417.9 2231 59.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2378.6 2344 55.5
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2346.6 2252 57.3
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2327.4 1716 69.6
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2319.7 2233 57.8
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2286.1 2057 60.2
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2228.8 2314 52.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2138.2 2249 52.9
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2117.4 2232 53.6
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2091.6 2243 52.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1918.3 1422 70.3
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1796.9 2385 44.0
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1621.7 1392 62.1
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1610.9 1723 52.6
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1472.6 2358 39.9
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1403.3 2346 38.2
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1368.6 1121 64.5
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1362.1 1014 69.2
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1350.5 1203 60.3
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1347.4 2190 39.7
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1324.3 2273 38.4
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1257.7 936 68.8
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1208.7 1068 60.0
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1134.4 1431 46.7
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.9e-280 970.7 1020 53.7
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 9.2e-275 951.8 788 65.0
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.8e-270 937.6 2455 30.7
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.4e-251 874.0 873 55.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.2e-227 793.5 720 58.9
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.3e-217 761.1 1370 38.1
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.9e-185 654.1 1012 43.4
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 4.4e-152 544.3 458 59.4
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 4.4e-152 544.3 2487 25.2
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.5e-112 412.9 370 60.5
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-83 316.6 328 52.4
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.1e-77 296.2 289 59.5
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-75 290.0 306 50.0
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.1e-70 273.9 766 29.5
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-67 262.3 322 46.9
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 8.0e-61 241.1 232 54.3
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.3e-55 223.8 179 67.6
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 9.4e-54 217.6 232 50.9
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-50 206.5 275 43.6
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.0e-43 183.3 140 69.3
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-37 164.1 221 43.0
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 4.9e-34 152.1 117 70.1
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 4.1e-33 149.1 120 62.5
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.3e-31 143.3 139 55.4
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 3.3e-30 139.4 168 42.3
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.8e-28 133.7 253 35.2
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 6.8e-28 131.7 111 63.1
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 3.0e-23 116.3 101 60.4
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 9.2e-17 94.7 110 42.7
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 9.3e-09 68.2 337 22.8


User provided reference genes

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