Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 2.8e-21 104.4 54 100.0
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.0e-15 85.9 54 81.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 1.0e-15 85.9 54 81.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 1.0e-15 85.9 54 81.5
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 1.4e-15 85.5 52 78.8
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 1.4e-15 85.5 54 79.6
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 2.3e-15 84.7 54 79.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 1.2e-14 82.4 54 77.8
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.0e-14 81.6 54 70.4
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.6e-14 81.3 54 70.4
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 2.6e-14 81.3 54 75.9
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 4.4e-14 80.5 54 75.9
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 5.7e-14 80.1 54 75.9
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 1.7e-13 78.6 54 77.8
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.2e-13 78.2 53 75.5
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 4.9e-13 77.0 54 72.2
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 6.3e-13 76.6 54 66.7
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 8.3e-13 76.3 49 77.6
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 8.3e-13 76.3 49 77.6
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 8.3e-13 76.3 49 77.6
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.4e-12 75.5 54 74.1
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 2.4e-12 74.7 54 70.4
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 4.1e-12 73.9 53 71.7
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 9.2e-12 72.8 54 70.4
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.6e-11 72.0 54 72.2
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 1.6e-11 72.0 54 72.2
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 72.2
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 3.5e-11 70.9 54 68.5
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 3.5e-11 70.9 48 72.9
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 3.5e-11 70.9 49 69.4
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 4.5e-11 70.5 53 67.9
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 5.9e-11 70.1 54 66.7
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.0e-10 69.3 54 63.0
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 64.8
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 64.8
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 2.9e-10 67.8 44 79.5
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 2.9e-10 67.8 48 75.0
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 5.0e-10 67.0 54 63.0
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 6.6e-10 66.6 53 67.9
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 5.6e-09 63.5 50 58.0
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.1e-08 61.6 45 71.1
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 2.1e-08 61.6 45 71.1
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 3.6e-08 60.8 54 57.4
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 4.7e-08 60.5 42 69.0
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 6.1e-08 60.1 52 61.5
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 6.1e-08 60.1 52 61.5
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 6.1e-08 60.1 52 61.5
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 6.1e-08 60.1 52 61.5
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 6.1e-08 60.1 54 55.6
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 61.5
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 61.5
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.8e-07 58.5 52 59.6
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.8e-07 58.5 52 59.6
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.8e-07 58.5 52 57.7
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 2.3e-07 58.2 52 57.7
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.3e-07 58.2 52 59.6
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 2.3e-07 58.2 49 57.1
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 2.3e-07 58.2 52 57.7
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 2.3e-07 58.2 48 58.3
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 59.6
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 59.6
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 57.7
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 4.0e-07 57.4 52 59.6
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 4.0e-07 57.4 52 57.7
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 5.2e-07 57.0 52 57.7
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 5.2e-07 57.0 52 57.7
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 5.2e-07 57.0 48 58.3
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 6.8e-07 56.6 52 53.8
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.2e-06 55.8 52 57.7
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.2e-06 55.8 52 57.7
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.5e-06 55.5 54 55.6
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 3.4e-06 54.3 52 57.7


User provided reference genes

Program Settings