Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 3.4e-170 601.7 322 100.0
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 3.7e-108 395.6 323 72.1
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 1.7e-105 386.7 320 70.3
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 1.3e-65 254.2 312 54.8
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.6e-63 247.3 325 52.9
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 3.1e-62 243.0 317 52.7
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 4.4e-61 239.2 334 48.8
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 2.4e-59 233.4 334 48.2
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 9.2e-59 231.5 323 50.8
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 1.2e-58 231.1 322 47.8
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 3.3e-56 223.0 298 50.7
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.1e-54 218.0 282 52.8
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 4.0e-54 216.1 318 46.5
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 1.2e-53 214.5 323 46.7
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 1.5e-53 214.2 321 47.4
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 4.4e-53 212.6 325 47.1
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 1.3e-52 211.1 321 44.5
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 1.7e-52 210.7 294 49.0
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 2.2e-52 210.3 324 45.4
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.9e-52 209.9 315 46.7
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 8.3e-52 208.4 302 47.0
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 1.1e-51 208.0 325 46.5
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.4e-51 207.6 324 45.1
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.9e-51 207.2 323 43.3
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 3.2e-51 206.5 325 44.9
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 5.4e-51 205.7 321 45.5
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 7.1e-51 205.3 313 44.4
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 1.6e-50 204.1 284 45.4
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 1.6e-50 204.1 322 45.7
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 1.6e-50 204.1 317 46.4
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.1e-50 203.8 298 45.3
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 2.1e-50 203.8 316 45.3
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.5e-50 203.0 298 45.3
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 3.5e-50 203.0 298 48.0
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 1.7e-49 200.7 315 45.7
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 6.6e-49 198.7 321 42.1
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 8.6e-49 198.4 311 45.0
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 1.5e-48 197.6 316 44.3
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 1.5e-48 197.6 315 45.1
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 1.5e-48 197.6 314 44.9
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 5.6e-48 195.7 312 44.6
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 5.6e-48 195.7 325 44.9
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 5.6e-48 195.7 315 44.8
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 5.6e-48 195.7 313 44.7
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 7.3e-48 195.3 293 46.4
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 7.3e-48 195.3 315 43.8
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 1.2e-47 194.5 323 41.8
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 3.6e-47 193.0 314 42.4
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 3.6e-47 193.0 315 43.5
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 1.4e-46 191.0 316 43.7
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 5.2e-46 189.1 324 42.9
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 8.9e-46 188.3 307 43.6
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.2e-45 188.0 325 41.8
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 1.2e-45 188.0 292 44.9
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 1.5e-45 187.6 304 45.7
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 3.4e-45 186.4 332 40.7
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 4.4e-45 186.0 316 44.3
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 2.9e-44 183.3 304 45.4
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 2.9e-44 183.3 313 42.2
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 6.4e-44 182.2 316 40.8
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 2.4e-43 180.3 289 46.4
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 3.2e-43 179.9 325 43.1
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 4.1e-43 179.5 297 43.8
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 4.1e-43 179.5 322 41.3
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 5.4e-43 179.1 303 40.3
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 2.1e-42 177.2 328 40.5
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 2.1e-42 177.2 291 41.9
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 2.7e-42 176.8 313 42.8
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.5e-42 176.4 316 39.9
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 3.5e-42 176.4 298 44.3
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 6.0e-42 175.6 324 40.1
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 7.8e-42 175.3 316 39.6
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 2.3e-41 173.7 294 43.9
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 3.0e-41 173.3 316 40.5
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 3.9e-41 172.9 310 42.3
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 5.1e-41 172.6 295 41.0
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 8.6e-41 171.8 325 38.2
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 8.6e-41 171.8 324 40.7
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.9e-40 170.6 324 40.4
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 2.5e-40 170.2 318 39.9
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 2.5e-40 170.2 299 41.8
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 5.6e-40 169.1 306 43.1
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 9.6e-40 168.3 326 40.2
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.2e-39 167.9 315 40.3
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 2.1e-39 167.2 299 41.1
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 2.1e-39 167.2 320 40.0
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 1.8e-38 164.1 318 39.0
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 1.8e-38 164.1 300 41.3
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 4.0e-38 162.9 302 39.4
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 4.0e-38 162.9 318 40.6
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 6.9e-38 162.2 295 42.4
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 8.9e-38 161.8 310 40.3
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 2.0e-37 160.6 318 39.9
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.0e-37 160.6 297 42.1
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 2.6e-37 160.2 315 39.7
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 4.4e-37 159.5 321 39.9
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 2.9e-36 156.8 292 40.1
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 3.8e-36 156.4 293 39.9
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 3.8e-36 156.4 319 39.5
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 6.4e-36 155.6 294 39.8
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 8.4e-36 155.2 298 39.6
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 8.4e-36 155.2 302 38.1
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 2.4e-35 153.7 289 40.5
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 3.2e-35 153.3 228 50.4
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 5.4e-35 152.5 293 42.0
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.1e-34 150.6 317 39.7
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 7.8e-34 148.7 289 40.8
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.0e-33 148.3 289 41.9
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.3e-33 147.9 253 43.5
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.3e-33 147.9 307 39.4
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.3e-33 147.1 291 40.9
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 2.3e-33 147.1 307 39.1
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 5.1e-33 146.0 161 54.7
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 1.9e-32 144.1 319 37.3
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 2.5e-32 143.7 291 39.9
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 2.5e-32 143.7 295 40.7
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 2.5e-32 143.7 291 39.5
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 5.6e-32 142.5 292 40.4
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 7.3e-32 142.1 301 38.9
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 9.6e-32 141.7 291 40.2
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 9.6e-32 141.7 317 37.9
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 9.6e-32 141.7 314 38.2
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 1.6e-31 141.0 291 40.2
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.6e-31 141.0 243 43.2
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 2.1e-31 140.6 291 40.2
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 2.1e-31 140.6 318 38.1
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 2.1e-31 140.6 293 39.2
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 3.6e-31 139.8 291 40.2
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.6e-31 139.8 301 38.9
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 1.4e-30 137.9 306 38.6
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 2.4e-30 137.1 313 36.4
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 5.3e-30 136.0 295 41.0
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 1.2e-29 134.8 320 36.2
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 1.5e-29 134.4 317 38.2
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 1.5e-29 134.4 321 38.0
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 1.5e-29 134.4 291 39.2
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 2.6e-29 133.7 310 36.5
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 7.6e-29 132.1 292 39.4
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 7.6e-29 132.1 133 57.9
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 2.9e-28 130.2 266 40.2
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.9e-28 130.2 133 56.4
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 3.8e-28 129.8 292 37.7
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 8.4e-28 128.6 292 38.0
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 5.1e-25 119.4 219 41.1
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.9e-24 117.5 121 58.7
PGR004G1946 Punica granatum HOM05D004089 ORTHO05D004687 1.9e-24 117.5 282 39.7
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 1.3e-23 114.8 291 34.7
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 1.3e-23 114.8 292 32.9
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 2.1e-23 114.0 202 41.6
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 2.1e-23 114.0 298 34.2
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 3.6e-23 113.2 279 36.9
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 8.1e-23 112.1 296 36.8
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.4e-22 111.3 254 37.4
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 1.8e-22 110.9 289 34.6
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 4.0e-22 109.8 311 32.8
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 1.2e-21 108.2 289 34.3
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 2.0e-21 107.5 290 33.8
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 2.6e-21 107.1 300 35.7
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 9.9e-21 105.1 339 33.0
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 2.2e-20 104.0 190 40.0
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 2.9e-20 103.6 127 48.0
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 3.8e-20 103.2 131 49.6
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 8.4e-20 102.1 131 50.4
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 5.5e-19 99.4 324 31.2
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 9.3e-19 98.6 178 39.3
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 2.7e-18 97.1 144 39.6
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 3.5e-18 96.7 129 47.3
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 5.1e-17 92.8 125 47.2
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 1.1e-16 91.7 306 31.4
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 2.5e-16 90.5 129 41.9
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 1.6e-15 87.8 292 33.6
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 6.9e-14 82.4 157 40.1
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 1.5e-13 81.3 309 29.1
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 2.0e-13 80.9 308 30.5
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 1.7e-12 77.8 323 30.3
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 3.8e-12 76.6 292 27.1
SEGI_21937 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 2.7e-10 70.5 323 27.6
Rhsim03G0244200 Rhododendron simsii HOM05D003669 ORTHO05D012266 8.2e-07 58.9 306 27.8
MBI04_g10457_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D012266 6.9e-06 55.8 110 38.2


User provided reference genes

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