Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.4e-51 206.1 109 100.0
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.3e-36 154.1 106 78.3
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 1.2e-29 133.3 103 64.1
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.5e-29 132.9 105 62.9
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 9.8e-29 130.2 103 62.1
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-28 129.8 100 70.0
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.3e-28 129.8 100 70.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 5.4e-27 124.4 101 68.3
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 1.2e-26 123.2 100 64.0
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 1.6e-26 122.9 104 70.2
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.6e-26 122.9 101 69.3
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 5.9e-26 120.9 102 64.7
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 7.7e-26 120.6 104 65.4
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.3e-25 119.8 74 79.7
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.8e-25 118.2 94 66.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 5.0e-25 117.9 100 64.0
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 6.5e-25 117.5 101 62.4
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 1.1e-24 116.7 102 61.8
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 7.2e-24 114.0 88 64.8
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.6e-23 111.7 103 61.2
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 4.7e-23 111.3 99 66.7
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 4.7e-23 111.3 101 59.4
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 6.1e-23 110.9 102 60.8
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 6.1e-23 110.9 109 61.5
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 8.0e-23 110.5 105 58.1
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 1.0e-22 110.2 103 61.2
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 1.4e-22 109.8 85 67.1
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 1.8e-22 109.4 101 57.4
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 5.2e-22 107.8 93 54.8
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 6.8e-22 107.5 101 66.3
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 6.8e-22 107.5 91 57.1
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 8.9e-22 107.1 93 53.8
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 1.5e-21 106.3 105 55.2
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 2.0e-21 105.9 103 60.2
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.6e-21 105.5 101 62.4
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 2.6e-21 105.5 97 59.8
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 3.4e-21 105.1 95 60.0
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 5.7e-21 104.4 111 55.0
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 9.8e-21 103.6 108 55.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 9.8e-21 103.6 92 60.9
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 1.3e-20 103.2 96 57.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.2e-20 102.4 95 58.9
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.8e-20 102.1 105 52.4
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.7e-20 101.7 101 56.4
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 3.7e-20 101.7 82 64.6
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 4.9e-20 101.3 99 62.6
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 6.3e-20 100.9 102 57.8
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 6.3e-20 100.9 105 52.4
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 8.3e-20 100.5 104 54.8
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 8.3e-20 100.5 88 63.6
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 8.3e-20 100.5 93 64.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-19 100.1 104 53.8
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.4e-19 99.8 108 52.8
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.4e-19 99.8 101 58.4
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 1.8e-19 99.4 99 54.5
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 2.4e-19 99.0 105 49.5
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 3.1e-19 98.6 96 56.2
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 3.1e-19 98.6 102 57.8
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 4.1e-19 98.2 94 57.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 5.4e-19 97.8 80 63.8
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.4e-19 97.8 102 61.8
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 7.0e-19 97.4 109 52.3
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.2e-19 97.1 95 57.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.2e-18 96.7 109 51.4
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.2e-18 96.7 105 50.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 1.2e-18 96.7 102 61.8
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.2e-18 96.7 105 49.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 1.6e-18 96.3 94 56.4
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.6e-18 96.3 82 62.2
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 2.0e-18 95.9 85 60.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.7e-18 95.5 95 55.8
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 3.5e-18 95.1 80 58.8
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 3.5e-18 95.1 102 56.9
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.5e-18 95.1 114 54.4
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 4.5e-18 94.7 108 49.1
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.5e-18 94.7 109 53.2
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 4.5e-18 94.7 105 49.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 4.5e-18 94.7 105 49.5
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.5e-18 94.7 105 50.5
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 4.5e-18 94.7 105 50.5
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 5.9e-18 94.4 95 54.7
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 7.8e-18 94.0 106 49.1
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 7.8e-18 94.0 81 58.0
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 7.8e-18 94.0 108 50.0
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 7.8e-18 94.0 107 52.3
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 1.0e-17 93.6 106 48.1
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.0e-17 93.6 106 48.1
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.3e-17 93.2 108 49.1
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.3e-17 93.2 106 52.8
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 1.3e-17 93.2 105 48.6
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.3e-17 93.2 103 51.5
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 1.7e-17 92.8 65 73.8
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.7e-17 92.8 99 53.5
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.3e-17 92.4 94 55.3
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.3e-17 92.4 99 51.5
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.3e-17 92.4 103 48.5
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 2.3e-17 92.4 106 49.1
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 3.8e-17 91.7 105 51.4
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.8e-17 91.7 99 54.5
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 3.8e-17 91.7 108 49.1
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.8e-17 91.7 77 62.3
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 5.0e-17 91.3 108 48.1
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-16 90.1 108 50.9
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.9e-16 89.4 95 61.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 1.9e-16 89.4 65 70.8
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 2.5e-16 89.0 108 49.1
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 2.5e-16 89.0 108 49.1
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.5e-16 89.0 82 56.1
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.3e-16 88.2 73 63.0
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 5.6e-16 87.8 95 53.7
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 5.6e-16 87.8 105 49.5
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 1.2e-15 86.7 82 56.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.2e-15 86.7 95 51.6
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.6e-15 86.3 94 51.1
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 3.6e-15 85.1 99 49.5
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 4.7e-15 84.7 109 46.8
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.7e-15 84.7 102 53.9
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 4.7e-15 84.7 101 47.5
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 4.7e-15 84.7 83 55.4
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 1.0e-14 83.6 103 44.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.8e-14 82.8 94 58.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.3e-14 82.4 106 50.9
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 5.2e-14 81.3 104 46.2
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 6.8e-14 80.9 107 47.7
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.5e-13 79.7 80 53.8
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 2.0e-13 79.3 118 44.1
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.0e-13 79.3 100 50.0
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 5.8e-13 77.8 108 42.6
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 5.8e-13 77.8 102 47.1
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 2.9e-12 75.5 56 66.1
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.9e-12 75.5 94 48.9
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.7e-12 75.1 92 48.9
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 3.7e-12 75.1 86 51.2
QL11p051756 Quercus lobata HOM05D004289 ORTHO05D005141 4.9e-12 74.7 78 55.1
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 1.1e-11 73.6 94 47.9
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.4e-11 73.2 108 45.4
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 2.0e-10 69.3 82 46.3
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 2.7e-10 68.9 72 52.8
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 3.5e-10 68.6 72 55.6
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 3.5e-10 68.6 95 42.1
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.6e-10 68.2 92 43.5
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 6.0e-10 67.8 79 49.4
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.0e-09 67.0 94 44.7
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.3e-09 66.6 95 43.2
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 1.3e-09 66.6 53 62.3
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 5.0e-09 64.7 59 57.6
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.5e-08 62.4 105 37.1
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.5e-08 62.4 105 37.1
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 3.3e-08 62.0 95 41.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.6e-08 61.2 67 40.3
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 9.5e-08 60.5 104 39.4
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 9.5e-08 60.5 105 36.2
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 2.1e-07 59.3 108 35.2
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 2.8e-07 58.9 105 41.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 6.2e-07 57.8 79 40.5
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 8.0e-07 57.4 78 43.6
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 8.0e-07 57.4 69 44.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-06 57.0 80 43.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 1.1e-06 57.0 77 40.3
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 1.4e-06 56.6 74 43.2
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 1.4e-06 56.6 76 39.5
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 1.4e-06 56.6 108 38.0
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 2.3e-06 55.8 80 42.5
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.3e-06 55.8 80 42.5
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.3e-06 55.8 80 42.5
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.3e-06 55.8 80 42.5
FAN08G1828 Fragaria x ananassa HOM05D004289 ORTHO05D206118 2.3e-06 55.8 27 92.6
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 2.3e-06 55.8 80 43.8
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.1e-06 55.5 74 40.5
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.0e-06 55.1 80 42.5
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.0e-06 55.1 74 37.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.0e-06 55.1 70 42.9
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.0e-06 55.1 80 38.8
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.0e-06 55.1 80 38.8
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 5.2e-06 54.7 80 42.5
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 6.8e-06 54.3 80 40.0
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 6.8e-06 54.3 80 40.0
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 6.8e-06 54.3 74 37.8
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 6.8e-06 54.3 80 38.8
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 6.8e-06 54.3 55 54.5
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 8.9e-06 53.9 80 41.2
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 8.9e-06 53.9 59 52.5
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 8.9e-06 53.9 74 41.9


User provided reference genes

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