Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.3e-60 236.5 141 100.0
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 3.9e-54 214.9 141 90.8
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 6.4e-49 197.6 143 85.3
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 8.4e-49 197.2 143 74.1
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 8.4e-49 197.2 143 84.6
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 1.2e-42 176.8 141 75.9
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 5.8e-42 174.5 142 66.9
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.0e-41 173.7 141 74.5
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.3e-41 173.3 141 74.5
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 8.4e-41 170.6 145 66.2
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.4e-40 169.9 142 73.9
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 1.9e-40 169.5 143 72.7
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 1.9e-40 169.5 141 74.5
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 2.5e-40 169.1 142 74.6
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 2.5e-40 169.1 142 73.2
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 7.1e-40 167.5 142 76.1
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 9.3e-40 167.2 142 72.5
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 9.3e-40 167.2 141 74.5
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 1.2e-39 166.8 142 74.6
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 1.2e-39 166.8 144 74.3
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 1.6e-39 166.4 137 76.6
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 2.1e-39 166.0 142 71.8
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 2.7e-39 165.6 142 73.9
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 6.0e-39 164.5 144 71.5
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 7.9e-39 164.1 142 73.9
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 1.0e-38 163.7 142 71.8
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 1.8e-38 162.9 138 73.2
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 2.3e-38 162.5 143 62.2
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 2.3e-38 162.5 143 62.2
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 3.0e-38 162.2 142 62.0
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.0e-38 162.2 143 62.2
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 3.9e-38 161.8 137 70.1
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 3.9e-38 161.8 141 68.8
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 5.1e-38 161.4 138 71.0
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 6.7e-38 161.0 141 58.9
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 8.7e-38 160.6 137 73.7
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 1.1e-37 160.2 141 61.7
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 1.1e-37 160.2 137 73.0
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.9e-37 159.5 143 61.5
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 3.3e-37 158.7 143 71.3
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 4.3e-37 158.3 141 61.0
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 4.3e-37 158.3 141 61.0
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 4.3e-37 158.3 141 61.0
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 7.4e-37 157.5 141 70.2
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 7.4e-37 157.5 139 74.1
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.6e-36 156.4 145 64.1
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 1.6e-36 156.4 141 70.9
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.1e-36 156.0 145 60.0
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 2.1e-36 156.0 145 60.0
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 3.7e-36 155.2 137 73.7
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 6.3e-36 154.5 138 71.7
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 6.3e-36 154.5 141 68.1
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 1.8e-35 152.9 141 56.7
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 2.4e-35 152.5 141 61.0
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 2.4e-35 152.5 137 59.9
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 2.4e-35 152.5 137 59.9
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 2.4e-35 152.5 142 54.9
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 5.3e-35 151.4 137 70.1
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 6.9e-35 151.0 139 71.9
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 9.0e-35 150.6 139 69.8
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 1.2e-34 150.2 137 58.4
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 1.2e-34 150.2 137 58.4
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 1.2e-34 150.2 142 68.3
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 1.2e-34 150.2 140 57.1
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 1.5e-34 149.8 137 70.1
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 2.0e-34 149.4 143 55.9
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 2.6e-34 149.1 134 67.9
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 2.6e-34 149.1 137 68.6
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 2.6e-34 149.1 141 57.4
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 2.6e-34 149.1 137 57.7
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 3.4e-34 148.7 137 59.1
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 4.5e-34 148.3 139 59.0
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 4.5e-34 148.3 139 57.6
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 4.5e-34 148.3 119 68.9
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 5.9e-34 147.9 137 62.8
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.0e-33 147.1 137 71.5
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 1.0e-33 147.1 141 58.9
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 1.0e-33 147.1 137 71.5
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 1.0e-33 147.1 139 66.9
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.0e-33 147.1 139 69.1
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 1.0e-33 147.1 140 66.4
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 1.7e-33 146.4 138 58.7
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 2.2e-33 146.0 96 81.2
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 2.9e-33 145.6 138 58.7
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 2.9e-33 145.6 138 69.6
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 2.9e-33 145.6 139 57.6
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 1.1e-32 143.7 138 71.7
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 5.5e-32 141.4 137 57.7
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 5.1e-30 134.8 116 66.4
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 3.7e-28 128.6 147 50.3
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 8.2e-28 127.5 117 72.6
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 8.2e-28 127.5 145 55.9
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 3.4e-26 122.1 141 53.2
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 7.7e-26 120.9 141 49.6
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 8.5e-25 117.5 101 76.2
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 7.2e-24 114.4 154 43.5
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 9.4e-24 114.0 114 68.4
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 1.4e-19 100.1 115 64.3
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 1.4e-19 100.1 134 45.5
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 3.1e-19 99.0 102 54.9
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.5e-18 96.7 141 44.7
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 3.4e-18 95.5 74 71.6
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 1.0e-17 94.0 124 35.5
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 1.9e-16 89.7 118 41.5
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.5e-16 89.4 77 59.7
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 2.1e-15 86.3 79 58.2
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 6.1e-15 84.7 134 35.1
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 7.9e-15 84.3 70 62.9
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 1.4e-14 83.6 132 36.4
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 2.3e-14 82.8 102 51.0
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 1.7e-12 76.6 90 46.7
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 1.1e-11 73.9 79 51.9
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 2.6e-10 69.3 76 47.4
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 7.7e-10 67.8 70 54.3
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.3e-09 67.0 49 67.3
Zm00001eb351370 Zea mays HOM05D002538 ORTHO05D003162 5.5e-08 61.6 84 48.8
Zm00001eb359390 Zea mays HOM05D006738 ORTHO05D008191 5.5e-08 61.6 87 49.4
Zm00001eb166970 Zea mays HOM05D002538 ORTHO05D003162 7.2e-08 61.2 84 48.8
Zm00001eb223600 Zea mays HOM05D002538 ORTHO05D008191 4.0e-06 55.5 84 45.2


User provided reference genes

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