Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 1.5e-195 686.0 347 100.0
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 8.1e-186 653.7 347 94.8
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 2.9e-167 592.0 347 84.7
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 4.6e-165 584.7 335 86.3
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 2.8e-162 575.5 352 81.8
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 3.4e-160 568.5 351 81.2
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 4.9e-159 564.7 350 79.7
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 1.1e-158 563.5 352 79.3
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 4.2e-158 561.6 351 80.9
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 5.5e-158 561.2 346 80.3
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 5.5e-158 561.2 351 80.6
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 9.3e-158 560.5 353 78.5
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 3.5e-157 558.5 350 79.4
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 1.3e-156 556.6 347 79.5
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 1.3e-156 556.6 346 79.8
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 2.3e-156 555.8 348 79.0
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 2.3e-156 555.8 346 79.8
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 8.7e-156 553.9 351 78.9
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 8.7e-156 553.9 340 80.3
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 1.5e-155 553.1 349 79.1
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 1.5e-155 553.1 348 78.7
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 4.3e-155 551.6 358 77.7
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 7.4e-155 550.8 347 79.0
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 1.3e-154 550.1 347 79.0
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 1.6e-154 549.7 347 78.4
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 1.6e-154 549.7 341 80.9
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 1.6e-154 549.7 353 78.8
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 2.1e-154 549.3 350 77.7
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 4.8e-154 548.1 347 78.4
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 6.2e-154 547.7 347 79.3
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 8.2e-154 547.4 343 78.4
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 1.1e-153 547.0 347 77.5
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 6.9e-153 544.3 347 75.8
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 9.0e-153 543.9 334 78.7
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 1.5e-152 543.1 346 76.3
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 1.5e-152 543.1 344 77.9
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 2.6e-152 542.3 347 75.8
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 3.4e-152 542.0 354 76.0
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 7.6e-152 540.8 339 79.1
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 1.0e-151 540.4 335 81.8
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 1.3e-151 540.0 356 77.2
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 1.3e-151 540.0 342 76.0
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 1.7e-151 539.7 346 76.0
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 1.7e-151 539.7 341 80.6
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 2.2e-151 539.3 342 76.3
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 2.2e-151 539.3 347 76.4
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.9e-151 538.9 351 76.6
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 3.8e-151 538.5 347 74.6
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 6.5e-151 537.7 341 77.7
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 1.1e-150 537.0 345 76.5
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 1.4e-150 536.6 349 76.8
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 2.5e-150 535.8 320 80.0
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 5.5e-150 534.6 341 76.8
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 7.1e-150 534.3 341 76.8
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 7.1e-150 534.3 341 76.8
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 9.3e-150 533.9 341 76.8
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 1.6e-149 533.1 343 76.4
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 6.0e-149 531.2 343 76.1
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 1.0e-148 530.4 345 76.2
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 1.8e-148 529.6 351 74.6
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 1.8e-148 529.6 341 76.0
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 3.0e-148 528.9 341 76.2
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 3.9e-148 528.5 341 76.0
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 5.1e-148 528.1 358 73.7
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 5.1e-148 528.1 335 77.3
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 3.3e-147 525.4 340 77.1
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 9.7e-147 523.9 312 81.4
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 1.3e-146 523.5 326 77.0
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 3.7e-146 521.9 346 74.0
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 4.8e-146 521.5 380 71.6
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 4.8e-146 521.5 399 66.7
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 8.2e-146 520.8 338 74.9
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 3.1e-145 518.8 344 74.7
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 4.1e-145 518.5 343 73.2
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 5.0e-143 511.5 353 74.5
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 1.2e-141 506.9 345 74.2
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 7.9e-141 504.2 343 71.7
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 2.5e-139 499.2 344 71.8
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.2e-138 496.1 347 72.9
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 2.4e-137 492.7 329 72.6
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 4.1e-137 491.9 333 71.8
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 1.6e-133 479.9 337 70.3
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 2.0e-128 463.0 332 67.5
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 7.7e-128 461.1 339 66.7
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 6.5e-127 458.0 263 85.2
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 3.9e-124 448.7 347 67.7
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 5.7e-123 444.9 325 65.2
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 9.4e-118 427.6 255 82.0
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.1e-117 426.4 347 65.1
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 3.4e-115 419.1 312 65.4
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 1.3e-114 417.2 398 59.0
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 1.4e-113 413.7 343 64.7
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 2.1e-109 399.8 330 64.5
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 8.0e-109 397.9 528 47.5
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 2.6e-107 392.9 366 60.4
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 2.4e-105 386.3 229 81.2
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 1.2e-104 384.0 222 83.8
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 1.9e-102 376.7 249 77.5
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 3.7e-90 335.9 194 83.5
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 5.1e-79 298.9 305 53.4
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 7.3e-78 295.0 167 82.6
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 1.3e-71 274.2 177 77.4
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 4.7e-69 265.8 220 58.6
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 5.2e-68 262.3 417 37.9
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 3.6e-61 239.6 327 42.8
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 1.1e-57 228.0 132 78.8
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 7.3e-54 215.3 127 83.5
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 9.9e-51 204.9 326 41.1
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 4.3e-46 189.5 344 35.2
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 3.4e-43 179.9 126 68.3
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 6.0e-40 169.1 97 81.4
SMO272G0012 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.6e-37 161.0 104 71.2
vmacro16045 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 3.2e-33 146.7 84 83.3
FAN08G1548 Fragaria x ananassa HOM05D006459 ORTHO05D008414 1.1e-25 121.7 65 86.2
CBR_g27970 Chara braunii HOM05D006459 ORTHO05D008414 9.4e-25 118.6 83 66.3
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.9e-17 94.4 76 60.5
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 9.4e-17 92.0 56 87.5
SEGI_00088 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 3.5e-11 73.6 44 72.7
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 3.8e-10 70.1 65 55.4
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 3.6e-08 63.5 143 33.6
Lsat_1_v5_gn_2_49420 Lactuca sativa HOM05D006459 ORTHO05D008414 2.6e-06 57.4 30 86.7


User provided reference genes

Program Settings