Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.8e-132 474.2 228 100.0
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.3e-120 436.4 229 92.6
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.8e-84 314.7 171 86.0
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.2e-82 308.5 165 89.7
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.2e-49 200.7 211 52.1
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.6e-49 200.3 211 52.1
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-47 194.1 160 63.8
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.5e-47 193.7 217 47.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 6.5e-43 178.3 164 53.0
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 3.2e-42 176.0 232 44.8
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 5.5e-42 175.3 199 48.7
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 9.4e-42 174.5 151 55.6
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 2.1e-41 173.3 224 42.9
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.8e-40 170.2 176 50.0
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 4.0e-40 169.1 143 55.2
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 8.8e-40 167.9 144 56.9
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 1.2e-39 167.5 151 55.0
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.5e-39 167.2 150 54.7
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-39 166.8 151 55.0
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-39 166.8 151 53.0
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 2.6e-39 166.4 151 53.0
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 9.8e-39 164.5 136 55.1
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.7e-38 163.7 133 56.4
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 1.7e-38 163.7 149 52.3
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-38 163.3 151 52.3
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 2.2e-38 163.3 149 51.7
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.8e-38 162.9 136 54.4
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 4.9e-38 162.2 136 54.4
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 4.9e-38 162.2 149 51.0
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 1.1e-37 161.0 149 55.0
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 2.0e-36 156.8 133 56.4
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.5e-36 156.0 133 51.9
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 5.9e-36 155.2 136 55.9
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.7e-35 153.7 126 56.3
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 2.3e-35 153.3 226 39.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.2e-34 149.1 216 42.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 9.5e-34 147.9 130 54.6
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.8e-33 146.4 126 54.0
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 3.4e-31 139.4 142 50.0
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 3.4e-31 139.4 151 45.7
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 4.4e-31 139.0 232 42.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 7.5e-31 138.3 154 45.5
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 7.5e-31 138.3 127 51.2
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 1.3e-30 137.5 234 41.9
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 2.2e-30 136.7 179 39.1
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 6.3e-30 135.2 156 46.2
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.8e-29 133.7 192 40.1
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.6e-28 130.6 198 39.9
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 3.5e-28 129.4 127 49.6
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 5.9e-28 128.6 141 44.7
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 2.9e-27 126.3 128 47.7
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 1.5e-26 124.0 134 46.3
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.9e-26 123.6 207 37.2
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 9.5e-26 121.3 149 40.3
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-25 120.9 133 45.9
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 2.1e-25 120.2 146 42.5
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 4.7e-25 119.0 119 46.2
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 6.1e-25 118.6 119 47.9
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 6.1e-25 118.6 146 42.5
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 1.0e-24 117.9 125 45.6
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 1.4e-24 117.5 115 47.8
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 1.8e-24 117.1 212 37.3
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.8e-24 117.1 150 40.7
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 3.1e-24 116.3 131 48.9
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 4.0e-24 115.9 131 49.6
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.2e-24 115.5 117 49.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 6.8e-24 115.2 141 45.4
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 6.8e-24 115.2 152 43.4
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 8.9e-24 114.8 116 49.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 8.9e-24 114.8 132 44.7
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.2e-23 114.4 152 43.4
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 1.2e-23 114.4 158 43.0
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-23 114.4 133 43.6
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 2.0e-23 113.6 193 38.9
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 2.0e-23 113.6 152 42.8
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 2.0e-23 113.6 133 42.9
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 2.6e-23 113.2 152 42.8
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 3.4e-23 112.8 141 44.7
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 3.4e-23 112.8 159 42.1
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 7.5e-23 111.7 141 44.7
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 7.5e-23 111.7 141 44.7
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 9.8e-23 111.3 163 43.6
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 9.8e-23 111.3 135 41.5
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 3.7e-22 109.4 126 45.2
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 6.4e-22 108.6 165 40.0
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.4e-21 107.5 132 44.7
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-21 107.5 191 37.7
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.4e-21 106.7 157 38.9
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 3.2e-21 106.3 122 43.4
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.4e-21 105.5 122 42.6
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 6.0e-20 102.1 126 38.9
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 7.8e-20 101.7 121 40.5
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 1.0e-19 101.3 117 45.3
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.0e-19 101.3 167 34.7
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.3e-19 100.9 134 42.5
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 1.3e-19 100.9 147 38.8
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.7e-19 100.5 165 39.4
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 2.3e-19 100.1 117 42.7
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 3.0e-19 99.8 188 33.0
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 3.0e-19 99.8 188 33.0
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 3.0e-19 99.8 177 38.4
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.9e-19 99.4 116 44.0
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 6.6e-19 98.6 184 37.5
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 6.6e-19 98.6 191 31.9
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 1.1e-18 97.8 114 43.9
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.1e-18 97.8 118 44.9
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 1.1e-18 97.8 113 39.8
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.5e-18 97.4 199 34.2
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.5e-18 97.4 117 40.2
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.9e-18 97.1 127 39.4
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.9e-18 97.1 111 40.5
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.1e-17 93.6 181 32.0
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 2.8e-17 93.2 181 32.0
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 2.8e-17 93.2 103 47.6
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.6e-17 92.8 131 40.5
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.4e-16 90.9 130 37.7
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 1.8e-16 90.5 127 43.3
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.3e-16 90.1 118 41.5
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-16 89.7 130 36.9
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-16 89.7 126 39.7
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 3.1e-16 89.7 168 35.1
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 3.1e-16 89.7 168 35.1
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 3.1e-16 89.7 168 35.1
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.2e-16 89.0 140 36.4
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.2e-16 89.0 109 44.0
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-15 87.8 121 42.1
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.0e-15 87.0 147 40.8
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.4e-15 86.3 126 38.1
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 3.4e-15 86.3 129 36.4
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 4.4e-15 85.9 187 31.6
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.8e-15 85.5 124 40.3
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 5.8e-15 85.5 194 35.1
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 7.5e-15 85.1 194 35.1
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 9.8e-15 84.7 187 31.0
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.2e-14 83.6 117 38.5
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-14 83.2 130 35.4
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.9e-14 83.2 153 37.3
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-14 82.8 108 38.9
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.9e-14 82.4 136 30.9
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 6.4e-14 82.0 194 35.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 6.4e-14 82.0 117 37.6
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 8.3e-14 81.6 97 48.5
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.1e-13 81.3 127 39.4
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 4.1e-13 79.3 115 35.7
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.4e-13 79.0 119 39.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 7.1e-13 78.6 93 44.1
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-12 77.4 127 38.6
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.6e-12 77.4 126 35.7
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.1e-12 77.0 99 41.4
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 2.1e-12 77.0 129 34.1
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 2.1e-12 77.0 100 47.0
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 2.1e-12 77.0 122 34.4
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.6e-12 75.9 113 38.1
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 6.0e-12 75.5 93 41.9
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 1.0e-11 74.7 145 32.4
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-11 73.6 122 38.5
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 3.0e-11 73.2 150 35.3
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 3.0e-11 73.2 150 35.3
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 5.1e-11 72.4 67 50.7
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.5e-10 70.9 153 32.7
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.5e-10 70.9 153 32.7
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.9e-10 70.5 71 47.9
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.5e-10 70.1 153 31.4
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 3.3e-10 69.7 163 32.5
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 3.3e-10 69.7 163 32.5
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 4.3e-10 69.3 169 31.4
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 5.6e-10 68.9 150 33.3
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 5.6e-10 68.9 150 33.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 7.3e-10 68.6 169 31.4
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 7.3e-10 68.6 165 32.1
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 9.5e-10 68.2 150 32.0
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-09 67.8 145 34.5
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 1.6e-09 67.4 80 47.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 2.1e-09 67.0 79 45.6
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-09 66.6 97 38.1
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 6.2e-09 65.5 116 34.5
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 1.4e-08 64.3 107 33.6
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-08 63.5 183 29.5
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-08 63.5 195 28.2
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 2.3e-08 63.5 195 28.2
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 5.2e-08 62.4 157 31.8
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.6e-07 60.1 102 37.3
Prupe.7G162100 Prunus persica HOM05D002733 ORTHO05D003856 4.4e-07 59.3 118 33.1
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.3e-06 57.8 118 32.2
Nitab4.5_0001004g0110 Nicotiana tabacum HOM05D002733 ORTHO05D003856 3.7e-06 56.2 120 36.7


User provided reference genes

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