Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.2e-99 365.5 172 100.0
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 6.2e-86 320.9 171 87.1
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 4.4e-84 314.7 171 86.0
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.2e-77 291.2 165 83.6
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.1e-45 187.2 129 72.1
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 4.0e-45 185.3 148 58.1
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 4.0e-45 185.3 148 58.1
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 1.3e-43 180.3 141 57.4
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 6.4e-43 177.9 151 55.6
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 1.1e-42 177.2 158 51.9
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 1.4e-42 176.8 137 59.1
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 1.4e-42 176.8 141 56.7
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 2.1e-41 172.9 158 52.5
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 4.6e-41 171.8 151 54.3
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.0e-41 171.4 150 54.0
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.0e-41 171.4 151 54.3
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 1.0e-40 170.6 151 53.6
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 1.3e-40 170.2 161 50.9
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.8e-40 169.9 151 53.0
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 6.7e-40 167.9 151 52.3
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 8.7e-40 167.5 151 53.0
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 1.1e-39 167.2 163 48.5
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 1.5e-39 166.8 163 47.9
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 3.3e-39 165.6 163 48.5
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 4.3e-39 165.2 144 55.6
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 7.4e-39 164.5 143 51.7
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 7.4e-39 164.5 141 53.2
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 9.6e-39 164.1 143 50.3
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 9.6e-39 164.1 144 54.9
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 1.8e-37 159.8 149 53.0
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 1.8e-37 159.8 134 53.7
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 4.0e-37 158.7 149 52.3
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 1.7e-35 153.3 147 51.0
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 3.8e-35 152.1 127 55.1
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 2.1e-33 146.4 131 53.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 2.7e-33 146.0 138 51.4
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 6.0e-33 144.8 127 52.8
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 3.9e-32 142.1 135 51.9
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 5.1e-32 141.7 140 52.1
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 1.5e-31 140.2 151 44.4
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 9.7e-31 137.5 127 51.2
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 2.2e-30 136.3 159 43.4
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 3.7e-30 135.6 134 50.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 6.9e-29 131.3 122 46.7
Cfa016244 Carpinus fangiana HOM05D002733 ORTHO05D003856 9.0e-29 131.0 124 49.2
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 9.0e-29 131.0 148 46.6
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 2.0e-28 129.8 144 45.1
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 3.4e-28 129.0 144 45.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 4.5e-28 128.6 130 47.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 4.5e-28 128.6 128 48.4
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 4.5e-28 128.6 154 44.2
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 7.6e-28 127.9 154 44.2
Haze_00185 Corylus avellana HOM05D002733 ORTHO05D003856 6.5e-27 124.8 129 47.3
Haze_00196 Corylus avellana HOM05D002733 ORTHO05D003856 6.5e-27 124.8 129 45.7
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 6.5e-27 124.8 119 47.9
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 1.9e-26 123.2 119 48.7
Cfa016245 Carpinus fangiana HOM05D002733 ORTHO05D003856 3.2e-26 122.5 123 47.2
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 4.2e-26 122.1 140 42.1
Solyc12g007300.1 Solanum lycopersicum HOM05D002733 ORTHO05D003856 7.2e-26 121.3 129 51.2
Sopen12g003260 Solanum pennellii HOM05D002733 ORTHO05D003856 7.2e-26 121.3 129 51.2
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.2e-25 120.6 172 39.0
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.2e-25 120.6 134 43.3
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-25 119.8 153 42.5
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.1e-25 119.8 129 51.2
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.6e-25 119.0 153 41.8
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 3.6e-25 119.0 153 42.5
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 6.1e-25 118.2 153 41.8
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 6.1e-25 118.2 157 43.9
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 7.9e-25 117.9 153 41.8
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 1.0e-24 117.5 150 40.7
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 1.8e-24 116.7 159 42.1
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.8e-24 116.7 140 43.6
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 1.1e-23 114.0 128 46.1
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 2.5e-23 112.8 122 45.9
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 2.5e-23 112.8 130 43.1
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 3.3e-23 112.5 127 43.3
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 5.7e-23 111.7 128 45.3
Haze_00197 Corylus avellana HOM05D002733 ORTHO05D003856 5.7e-23 111.7 152 38.8
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 7.4e-23 111.3 131 42.7
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 1.3e-22 110.5 128 45.3
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.3e-22 110.5 128 45.3
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 1.3e-22 110.5 131 42.7
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.2e-22 109.8 183 37.2
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 3.7e-22 109.0 157 40.1
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 8.2e-22 107.8 165 40.0
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 1.1e-21 107.5 128 46.9
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 1.8e-21 106.7 132 43.2
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 2.4e-21 106.3 122 41.8
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 2.4e-21 106.3 156 42.3
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 4.1e-21 105.5 173 38.2
TPR.G1447 Trifolium pratense HOM05D002733 ORTHO05D003856 9.1e-21 104.4 127 40.2
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.0e-20 103.2 117 44.4
Glyma.04G133200 Glycine max HOM05D002733 ORTHO05D003856 3.4e-20 102.4 126 38.9
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 3.4e-20 102.4 130 46.2
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 4.5e-20 102.1 151 35.8
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 7.7e-20 101.3 116 43.1
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 7.7e-20 101.3 113 40.7
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 1.0e-19 100.9 118 44.9
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 1.3e-19 100.5 122 42.6
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 1.3e-19 100.5 111 41.4
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-19 99.8 118 40.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 2.2e-19 99.8 118 40.7
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 2.2e-19 99.8 127 40.9
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 2.9e-19 99.4 159 34.0
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 3.8e-19 99.0 125 38.4
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 5.0e-19 98.6 129 45.0
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 6.5e-19 98.2 104 48.1
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 8.5e-19 97.8 142 40.8
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 8.5e-19 97.8 142 38.0
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-18 96.7 113 42.5
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-18 96.7 147 36.1
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 1.9e-18 96.7 147 36.1
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 1.9e-18 96.7 147 36.1
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 1.9e-18 96.7 140 40.0
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 4.2e-18 95.5 114 41.2
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 9.4e-18 94.4 133 38.3
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 1.2e-17 94.0 108 40.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 2.1e-17 93.2 108 40.7
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.6e-17 92.4 116 38.8
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 1.0e-16 90.9 117 37.6
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-16 90.1 141 34.0
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.8e-16 90.1 130 40.8
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.3e-16 89.7 123 39.8
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.9e-16 89.0 108 40.7
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 6.7e-16 88.2 117 39.3
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 1.1e-15 87.4 133 33.1
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.0e-15 86.7 117 38.5
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.6e-15 86.3 111 37.8
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 2.6e-15 86.3 148 34.5
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.7e-15 85.1 118 38.1
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.3e-14 84.0 127 38.6
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-14 83.6 121 37.2
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.7e-14 83.6 109 40.4
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 2.2e-14 83.2 145 34.5
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-14 83.2 145 34.5
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 2.2e-14 83.2 145 34.5
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 2.2e-14 83.2 145 34.5
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.8e-14 82.8 128 39.1
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-14 82.4 151 33.8
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.7e-14 82.4 110 35.5
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 6.3e-14 81.6 93 44.1
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.1e-13 80.9 129 35.7
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 1.1e-13 80.9 145 35.9
Aqoxy1G01499 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.4e-13 80.5 123 35.8
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 1.4e-13 80.5 149 36.9
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.8e-13 80.1 97 46.4
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 3.1e-13 79.3 144 31.2
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 4.1e-13 79.0 118 38.1
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.9e-13 78.2 99 40.4
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 1.2e-12 77.4 122 32.8
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.0e-12 76.6 159 34.0
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.5e-12 75.5 93 38.7
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 7.7e-12 74.7 153 32.7
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 7.7e-12 74.7 153 32.7
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.7e-12 74.7 67 52.2
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 7.7e-12 74.7 103 39.8
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-11 74.3 111 37.8
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 1.7e-11 73.6 141 34.0
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 1.7e-11 73.6 141 34.0
Dinv07992 Davidia involucrata HOM05D002733 ORTHO05D003856 1.7e-11 73.6 123 40.7
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 2.2e-11 73.2 152 30.9
FAN28G2808 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-11 73.2 71 49.3
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 2.9e-11 72.8 153 32.7
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 2.9e-11 72.8 164 29.3
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 3.8e-11 72.4 164 29.9
TPR.G22027 Trifolium pratense HOM05D002733 ORTHO05D003856 3.8e-11 72.4 92 39.1
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.0e-11 72.0 97 40.2
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.0e-11 72.0 138 32.6
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 1.9e-10 70.1 154 32.5
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 1.9e-10 70.1 154 32.5
Phvul.004G029250 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.9e-10 70.1 124 33.9
Phvul.004G169400 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 1.9e-10 70.1 124 34.7
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 4.2e-10 68.9 158 32.9
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 4.2e-10 68.9 158 32.9
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 5.5e-10 68.6 145 31.7
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 5.5e-10 68.6 145 31.7
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 7.2e-10 68.2 160 32.5
COL.COLO4_00094 Corchorus olitorius HOM05D002733 ORTHO05D003856 9.4e-10 67.8 79 44.3
VMungo0464G0934 Vigna mungo HOM05D022012 ORTHO05D003856 3.6e-09 65.9 116 32.8
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 4.7e-09 65.5 107 33.6
Prupe.7G162100 Prunus persica HOM05D002733 ORTHO05D003856 2.3e-08 63.2 118 33.9
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 3.0e-08 62.8 156 32.1
Dinv26718 Davidia involucrata HOM05D002733 ORTHO05D003856 3.0e-08 62.8 92 44.6
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 8.8e-08 61.2 131 32.1
Nitab4.5_0001004g0110 Nicotiana tabacum HOM05D002733 ORTHO05D003856 1.5e-07 60.5 79 49.4
Phvul.004G169500 Phaseolus vulgaris HOM05D022012 ORTHO05D003856 7.4e-07 58.2 118 30.5


User provided reference genes

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