Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 3.8e-28 127.5 66 100.0
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.0e-21 105.1 63 87.3
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.0e-21 105.1 63 87.3
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 1.3e-20 102.4 63 77.8
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 1.7e-20 102.1 63 79.4
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 2.3e-20 101.7 61 78.7
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 2.3e-20 101.7 64 81.2
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 5.0e-20 100.5 63 76.2
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 6.6e-20 100.1 64 76.6
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 6.6e-20 100.1 61 80.3
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.5e-19 99.0 67 74.6
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 1.9e-19 98.6 65 75.4
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 2.5e-19 98.2 62 79.0
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 2.5e-19 98.2 64 73.4
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 4.2e-19 97.4 59 78.0
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 4.2e-19 97.4 59 78.0
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 4.2e-19 97.4 59 78.0
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 4.2e-19 97.4 65 72.3
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 5.5e-19 97.1 63 74.6
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 7.2e-19 96.7 63 77.8
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 9.5e-19 96.3 61 75.4
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 9.5e-19 96.3 61 78.7
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 9.5e-19 96.3 59 74.6
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 1.2e-18 95.9 63 74.6
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 1.6e-18 95.5 60 80.0
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.1e-18 95.1 63 74.6
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.1e-18 95.1 63 74.6
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 2.1e-18 95.1 63 74.6
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 2.1e-18 95.1 63 74.6
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 2.8e-18 94.7 63 73.0
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 3.6e-18 94.4 63 73.0
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 3.6e-18 94.4 63 73.0
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 3.6e-18 94.4 61 73.8
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 4.7e-18 94.0 61 73.8
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 6.1e-18 93.6 63 73.0
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 6.1e-18 93.6 62 75.8
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.0e-17 92.8 63 73.0
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 1.4e-17 92.4 64 73.4
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 1.4e-17 92.4 61 72.1
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 1.4e-17 92.4 60 73.3
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 3.0e-17 91.3 65 69.2
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 4.0e-17 90.9 54 81.5
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 6.8e-17 90.1 64 67.2
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 6.8e-17 90.1 64 70.3
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 6.8e-17 90.1 64 67.2
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 6.8e-17 90.1 64 68.8
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 1.5e-16 89.0 64 65.6
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 1.5e-16 89.0 61 68.9
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 2.0e-16 88.6 64 65.6
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.6e-16 88.2 62 69.4
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 3.4e-16 87.8 64 64.1
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 3.4e-16 87.8 64 64.1
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 3.4e-16 87.8 64 70.3
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 4.4e-16 87.4 72 66.7
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 5.7e-16 87.0 64 65.6
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 7.5e-16 86.7 53 81.1
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 7.5e-16 86.7 53 79.2
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 1.3e-15 85.9 53 77.4
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 1.7e-15 85.5 64 62.5
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 1.7e-15 85.5 64 60.9
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 2.8e-15 84.7 55 74.5
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 2.8e-15 84.7 64 60.9
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 2.8e-15 84.7 64 60.9
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 3.7e-15 84.3 64 60.9
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 3.7e-15 84.3 64 60.9
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 3.7e-15 84.3 64 60.9
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 4.9e-15 84.0 64 60.9
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 6.3e-15 83.6 64 60.9
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 1.1e-14 82.8 64 60.9
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 1.1e-14 82.8 64 60.9
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 1.4e-14 82.4 60 70.0
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 1.4e-14 82.4 60 70.0
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 1.4e-14 82.4 65 64.6
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 2.4e-14 81.6 53 75.5
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.1e-14 81.3 60 68.3
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.1e-14 81.3 60 68.3
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 4.1e-14 80.9 60 68.3
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 9.2e-14 79.7 64 57.8
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 9.2e-14 79.7 62 67.7
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 9.2e-14 79.7 60 63.3
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 1.2e-13 79.3 51 68.6
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 1.2e-13 79.3 51 68.6
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 1.2e-13 79.3 63 58.7
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 1.6e-13 79.0 60 60.0
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 3.5e-13 77.8 64 62.5
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 5.0e-12 73.9 56 64.3
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.9e-11 72.0 50 72.0
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.3e-11 71.2 56 62.5
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 6.1e-10 67.0 64 53.1
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 6.1e-10 67.0 64 53.1
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.8e-09 65.5 65 49.2
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 8.9e-09 63.2 50 64.0
Lsat_1_v5_gn_9_48861 Lactuca sativa HOM05D007503 ORTHO05D009487 7.5e-08 60.1 43 69.8
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 1.3e-07 59.3 40 80.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 1.7e-07 58.9 41 70.7
HanXRQChr14g0445891 Helianthus annuus HOM05D007503 ORTHO05D009487 4.9e-07 57.4 41 75.6
Mapoly0109s0063 Marchantia polymorpha HOM05D007503 ORTHO05D009487 1.4e-06 55.8 40 75.0
arahy.Tifrunner.gnm1.ann1.CKCH2H Arachis hypogaea HOM05D007503 ORTHO05D009487 1.9e-06 55.5 40 70.0
arahy.Tifrunner.gnm1.ann1.17W1X2 Arachis hypogaea HOM05D007503 ORTHO05D009487 3.2e-06 54.7 40 70.0


User provided reference genes

Program Settings