Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 8.5e-183 643.7 352 100.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.3e-148 529.3 352 83.2
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.6e-133 479.9 352 75.0
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 4.3e-126 455.3 352 71.9
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.2e-125 453.8 352 72.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.6e-125 453.4 352 71.0
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.4e-124 450.3 350 73.1
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 4.4e-123 445.3 352 70.5
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.4e-121 440.3 352 71.0
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.9e-121 439.9 351 71.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 2.4e-121 439.5 352 69.9
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.2e-120 437.2 352 69.9
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 2.7e-120 436.0 352 70.2
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.6e-120 435.3 352 69.6
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.0e-119 434.1 352 70.2
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 2.3e-119 433.0 353 72.0
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.9e-118 429.9 353 69.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.3e-118 428.7 353 68.8
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.6e-117 426.8 350 68.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 3.6e-117 425.6 352 69.9
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.4e-116 423.7 352 69.6
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 2.4e-116 422.9 353 67.1
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 3.1e-116 422.5 354 67.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.2e-115 420.6 352 69.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.0e-115 419.9 353 69.4
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.0e-115 419.9 352 67.9
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.6e-115 419.5 352 68.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.4e-115 419.1 353 67.1
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.8e-114 415.6 352 67.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.8e-114 415.6 352 68.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 6.4e-114 414.8 352 68.5
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 8.4e-114 414.5 363 67.5
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 3.2e-113 412.5 366 67.8
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.1e-112 409.8 339 68.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.5e-112 409.1 352 67.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.5e-110 402.9 354 66.1
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.3e-109 400.6 352 65.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 4.8e-109 398.7 353 64.0
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 9.0e-108 394.4 352 64.8
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.2e-107 394.0 352 64.5
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 3.4e-107 392.5 354 63.8
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 5.8e-107 391.7 362 62.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.7e-106 390.2 352 64.2
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.7e-106 390.2 422 56.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 2.2e-106 389.8 356 65.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 3.8e-106 389.0 353 63.5
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.9e-106 388.7 346 65.3
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.1e-105 387.5 354 63.0
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 5.4e-105 385.2 352 63.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.2e-104 384.0 370 62.2
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.2e-104 384.0 353 62.0
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.6e-104 383.6 352 63.4
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.6e-104 383.6 353 61.8
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.7e-104 382.9 355 62.3
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.5e-104 382.5 352 63.1
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.5e-104 382.5 352 63.1
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 6.0e-104 381.7 352 63.4
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.3e-103 380.6 352 62.8
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.3e-103 380.6 355 63.7
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 6.6e-103 378.3 353 64.0
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.5e-102 377.1 352 62.8
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.5e-102 377.1 357 63.6
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.6e-101 373.6 353 62.6
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.1e-101 373.2 352 63.1
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 2.1e-101 373.2 352 63.1
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 3.6e-101 372.5 352 60.5
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 3.6e-101 372.5 365 61.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 4.8e-101 372.1 352 64.2
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.4e-100 369.8 352 62.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.2e-99 367.5 352 62.5
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.2e-99 367.5 356 61.8
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 1.5e-99 367.1 352 61.6
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.5e-99 367.1 405 56.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.0e-99 366.7 352 62.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 3.4e-99 365.9 352 63.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 7.6e-99 364.8 352 61.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-98 364.0 352 62.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.3e-98 364.0 352 62.5
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 3.8e-98 362.5 352 61.4
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.4e-98 361.7 352 61.1
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 6.4e-98 361.7 355 61.7
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.1e-97 360.9 352 61.1
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-97 360.9 342 63.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 9.3e-97 357.8 354 60.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 4.3e-94 349.0 352 60.8
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.1e-92 344.4 342 59.6
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 5.3e-92 342.0 302 66.2
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.5e-91 340.5 349 59.0
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-89 334.3 340 60.0
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 7.1e-89 331.6 374 56.7
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 7.1e-89 331.6 345 56.5
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 5.1e-87 325.5 358 58.1
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 1.5e-86 323.9 353 56.4
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.5e-86 323.2 382 53.1
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 6.3e-85 318.5 252 71.0
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.1e-78 297.7 317 58.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.0e-75 287.0 355 53.8
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 2.2e-74 283.5 356 50.8
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 4.1e-68 262.7 355 51.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 4.5e-67 259.2 201 70.6
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.0e-63 248.1 235 64.3
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 5.3e-60 235.7 340 46.5
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.0e-58 231.5 235 59.6
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.1e-57 228.0 195 68.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 9.4e-57 224.9 143 81.1
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 8.0e-56 221.9 232 59.9
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 1.4e-47 194.5 182 62.1
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 3.5e-43 179.9 203 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 7.7e-43 178.7 308 39.3
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.5e-41 174.5 238 47.9
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 3.6e-40 169.9 236 47.0
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 2.3e-39 167.2 377 36.1
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.0e-39 166.4 135 68.9
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.3e-34 150.6 228 47.4
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-33 147.5 115 70.4
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.6e-32 144.4 309 36.9
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.6e-32 144.4 98 78.6
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.5e-30 135.6 228 44.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.8e-28 131.0 371 31.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.2e-23 112.8 71 81.7
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-20 105.1 296 34.8
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-20 104.4 325 32.0
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.2e-20 103.6 94 62.8
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.6e-19 101.3 102 58.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 2.8e-16 90.5 77 66.2
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.9e-13 80.5 88 54.5
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.1e-12 78.6 97 46.4
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.4e-12 77.4 232 33.6
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 4.1e-12 76.6 124 43.5
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 6.6e-10 69.3 46 78.3
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 4.3e-09 66.6 134 38.8
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 1.6e-08 64.7 129 41.9
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 2.1e-08 64.3 86 51.2
Sopen03g009730 Solanum pennellii HOM05D005714 ORTHO05D006812 1.5e-06 58.2 90 46.7
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.4e-06 57.0 103 44.7
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 3.4e-06 57.0 110 47.3


User provided reference genes

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