Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 0.0e+00 1213.7 608 100.0
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 5.1e-268 927.5 640 74.2
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 4.2e-254 881.3 603 75.5
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.8e-239 831.6 605 70.1
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.9e-228 795.0 599 67.9
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.2e-226 787.3 602 67.3
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.8e-225 786.2 599 67.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.4e-224 781.9 605 67.3
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 7.2e-222 774.2 599 65.8
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.2e-221 773.5 599 65.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.8e-220 769.6 605 65.1
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.8e-220 769.6 603 66.0
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.3e-220 769.2 604 67.7
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.9e-220 768.5 635 63.8
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 2.6e-219 765.8 609 65.5
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 7.4e-219 764.2 585 67.5
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 6.3e-218 761.1 604 65.2
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 7.0e-217 757.7 596 65.4
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.6e-216 756.5 607 64.9
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.9e-214 749.6 604 64.4
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.2e-213 746.9 625 63.4
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 4.7e-213 745.0 645 62.0
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 1.0e-212 743.8 608 65.5
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 4.0e-212 741.9 599 64.3
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 4.0e-212 741.9 608 64.5
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.7e-210 736.5 586 65.2
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 6.3e-210 734.6 606 62.5
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 8.2e-210 734.2 606 62.4
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.1e-209 733.8 599 63.6
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 3.1e-209 732.3 610 63.8
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 7.7e-208 727.6 606 64.5
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 2.2e-207 726.1 590 64.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 3.8e-207 725.3 608 63.0
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.1e-206 723.8 592 63.3
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.7e-205 718.4 607 62.4
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.0e-204 717.2 558 66.1
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 2.3e-204 716.1 609 62.9
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 8.8e-204 714.1 599 62.9
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.2e-203 713.8 607 62.8
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 4.8e-202 708.4 597 62.0
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 6.1e-197 691.4 605 61.3
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 4.0e-196 688.7 608 59.0
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 6.8e-196 688.0 640 59.1
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 6.8e-196 688.0 597 61.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 3.4e-195 685.6 603 61.5
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.1e-193 680.6 580 61.9
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 7.0e-193 677.9 603 60.7
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 6.6e-191 671.4 595 61.5
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.9e-190 669.8 603 59.5
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.3e-190 669.1 604 59.4
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.3e-188 662.9 607 57.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.3e-188 662.9 604 58.4
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 6.8e-188 661.4 603 59.4
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 7.5e-187 657.9 599 57.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.2e-186 656.4 487 68.0
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 3.7e-186 655.6 591 58.0
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.4e-185 651.7 596 59.2
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.7e-184 649.4 607 58.6
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 5.9e-184 648.3 596 58.2
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 7.8e-184 647.9 612 57.7
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.3e-183 647.1 641 55.9
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 5.0e-183 645.2 603 58.9
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.9e-182 643.3 602 56.3
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 5.2e-180 635.2 607 55.7
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.2e-179 634.0 607 55.2
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.6e-179 632.9 611 58.1
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.3e-178 630.6 601 55.6
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.9e-178 629.4 610 55.7
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 8.3e-178 627.9 609 58.1
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 7.0e-177 624.8 589 57.6
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.6e-176 623.6 613 57.9
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 3.9e-175 619.0 612 55.9
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 3.9e-175 619.0 619 55.3
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 6.6e-175 618.2 619 54.9
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 8.6e-175 617.8 603 55.4
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 2.5e-174 616.3 534 61.0
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 2.1e-173 613.2 605 54.7
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 6.4e-170 601.7 593 54.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 6.4e-170 601.7 616 54.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.9e-169 600.1 594 53.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 2.4e-169 599.7 601 53.6
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 7.1e-169 598.2 623 51.8
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 4.0e-164 582.4 602 51.8
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.4e-163 578.9 598 51.7
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 9.9e-163 577.8 665 51.0
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.2e-161 572.8 449 64.8
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 7.1e-161 571.6 604 51.7
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 9.0e-156 554.7 616 49.7
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.5e-155 553.9 604 51.5
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 2.3e-151 540.0 410 69.3
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 8.1e-149 531.6 606 49.0
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 4.0e-148 529.3 618 49.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-147 527.7 506 57.9
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.4e-140 503.4 387 66.1
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.9e-129 467.2 641 45.2
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.0e-127 461.5 604 46.0
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 2.0e-123 447.2 548 49.1
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 4.2e-121 439.5 455 52.1
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.3e-117 427.9 380 57.1
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.4e-108 397.9 619 40.5
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 4.1e-108 396.4 596 37.9
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.5e-97 361.3 692 35.4
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 5.3e-92 342.8 385 48.1
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.7e-85 321.2 409 48.7
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 8.9e-79 298.9 393 49.6
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 3.4e-78 297.0 779 32.1
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.7e-66 258.1 477 38.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 2.6e-62 244.2 635 30.6
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 2.3e-58 231.1 328 45.4
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.2e-55 219.9 228 57.5
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 4.9e-45 186.8 258 43.0
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 2.4e-44 184.5 209 51.2
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 6.6e-34 149.8 628 24.8
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 2.5e-33 147.9 555 25.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-29 135.6 146 54.1
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.4e-28 132.1 127 55.1
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-27 129.0 94 64.9
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.1e-23 115.9 99 64.6
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.8e-21 107.5 148 46.6
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.1e-20 105.9 82 65.9
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 2.5e-20 104.8 115 54.8
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 8.7e-18 96.3 108 50.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 9.0e-15 86.3 114 48.2
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.1e-12 79.3 103 48.5
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.2e-11 75.9 176 27.8
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.1e-11 75.1 45 77.8
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 3.7e-08 64.3 38 76.3
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 8.2e-08 63.2 135 33.3
Cpa.g.sc70.72 Carica papaya HOM05D006071 ORTHO05D007462 1.1e-07 62.8 95 37.9
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 1.1e-07 62.8 88 35.2
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 1.4e-07 62.4 88 34.1
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 1.4e-07 62.4 88 34.1
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.9e-07 60.1 60 38.3
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 9.0e-07 59.7 60 38.3
ECA236G2819 Erigeron canadensis HOM05D000463 ORTHO05D001294 9.0e-07 59.7 96 29.2
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 9.0e-07 59.7 60 38.3
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 1.2e-06 59.3 64 37.5
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 2.0e-06 58.5 104 29.8
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 2.0e-06 58.5 104 29.8
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 2.0e-06 58.5 73 32.9
VMungo1127G0376 Vigna mungo HOM05D000463 ORTHO05D001294 2.6e-06 58.2 125 28.0
Gohir.A01G064500 Gossypium hirsutum HOM05D000463 ORTHO05D001294 3.4e-06 57.8 135 26.7
Zm00001eb075760 Zea mays HOM05D000463 ORTHO05D001294 3.4e-06 57.8 65 35.4
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 4.5e-06 57.4 61 36.1
Ah.09g237320 Amaranthus hybridus HOM05D000463 ORTHO05D001294 4.5e-06 57.4 61 34.4
Carub.0004s2436 Capsella rubella HOM05D000463 ORTHO05D004638 4.5e-06 57.4 291 23.4
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 4.5e-06 57.4 60 35.0
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 4.5e-06 57.4 60 35.0
Lj8P156T32 Lonicera japonica HOM05D000463 ORTHO05D001294 4.5e-06 57.4 61 36.1
MD11G1245000 Malus domestica HOM05D000463 ORTHO05D001294 4.5e-06 57.4 112 26.8
Ah.14g089430 Amaranthus hybridus HOM05D000463 ORTHO05D001294 5.9e-06 57.0 61 34.4
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 5.9e-06 57.0 60 40.0
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 5.9e-06 57.0 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 5.9e-06 57.0 60 40.0
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 5.9e-06 57.0 60 38.3
Rhsim03G0005400 Rhododendron simsii HOM05D000463 ORTHO05D004638 5.9e-06 57.0 67 38.8
CDE05G3599 Ceratophyllum demersum HOM05D000463 ORTHO05D001294 7.7e-06 56.6 61 37.7
AUR62017010 Chenopodium quinoa HOM05D000463 ORTHO05D001294 7.7e-06 56.6 182 20.9
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 7.7e-06 56.6 77 29.9
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 7.7e-06 56.6 61 36.1
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 7.7e-06 56.6 61 36.1
FvH4_6g26170 Fragaria vesca HOM05D000463 ORTHO05D001294 7.7e-06 56.6 116 29.3
Os02g0639800 Oryza sativa ssp. japonica HOM05D000463 ORTHO05D001294 7.7e-06 56.6 66 37.9
MSTRG.7331 Avicennia marina HOM05D000463 ORTHO05D001294 1.0e-05 56.2 60 36.7
Migut.H01182 Erythranthe guttata HOM05D000463 ORTHO05D001294 1.0e-05 56.2 89 28.1
Migut.M01146 Erythranthe guttata HOM05D000463 ORTHO05D001294 1.0e-05 56.2 60 35.0
FvH4_6g22060 Fragaria vesca HOM05D000463 ORTHO05D004638 1.0e-05 56.2 60 41.7
FAN14G0395 Fragaria x ananassa HOM05D000463 ORTHO05D004638 1.0e-05 56.2 60 41.7
Lj3g0009712 Lotus japonicus HOM05D000463 ORTHO05D001294 1.0e-05 56.2 60 38.3


User provided reference genes

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