Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G000800 Carya illinoinensis HOM05D000445 ORTHO05D000314 2.5e-36 154.8 75 100.0
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.0e-21 106.3 68 75.0
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_0_15540 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_3_105620 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_9_18701 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
Nn2g12581 Nelumbo nucifera HOM05D000806 ORTHO05D002320 1.8e-21 105.5 68 73.5
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.8e-21 105.5 68 75.0
arahy.Tifrunner.gnm1.ann1.R6YYA0 Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 73.5
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.3e-21 105.1 68 75.0
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 5.2e-21 104.0 68 73.5
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 5.2e-21 104.0 68 73.5
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 8.8e-21 103.2 64 76.6
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 8.8e-21 103.2 68 73.5
Sc25g0001980 Simmondsia chinensis HOM05D000445 ORTHO05D000314 8.8e-21 103.2 68 73.5
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-20 102.8 68 73.5
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 1.5e-20 102.4 68 72.1
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 1.5e-20 102.4 68 73.5
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.5e-20 102.4 68 73.5
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.5e-20 102.4 68 73.5
Solyc00g500148.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.5e-20 102.4 68 72.1
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.6e-20 101.7 68 72.1
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 3.3e-20 101.3 68 72.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 3.3e-20 101.3 68 72.1
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 3.3e-20 101.3 68 72.1
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 3.3e-20 101.3 68 72.1
Nn020s41480 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.4e-20 100.1 68 72.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 9.7e-20 99.8 69 71.0
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.3e-19 99.4 69 69.6
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.7e-19 99.0 68 70.6
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.7e-19 99.0 68 70.6
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 2.2e-19 98.6 68 70.6
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.2e-19 98.6 68 70.6
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.7e-19 97.8 68 70.6
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.7e-19 97.8 68 70.6
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 3.7e-19 97.8 68 72.1
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-18 95.5 68 69.1
Eucgr.J02700 Eucalyptus grandis HOM05D000445 ORTHO05D000314 3.1e-18 94.7 62 74.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 7.0e-18 93.6 68 67.6
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 7.0e-18 93.6 68 67.6
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 9.1e-18 93.2 68 70.6
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 9.1e-18 93.2 68 70.6
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 9.1e-18 93.2 68 70.6
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 9.1e-18 93.2 68 67.6
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 2.6e-17 91.7 68 69.1
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 5.9e-17 90.5 68 69.1
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 7.7e-17 90.1 68 67.6
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.0e-16 89.7 68 67.6
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.0e-16 89.7 67 64.2
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.9e-16 88.2 60 73.3
Oeu058356.1 Olea europaea HOM05D000445 ORTHO05D000314 2.9e-16 88.2 64 68.8
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 8.5e-16 86.7 62 67.7
EL10Ac1g00652 Beta vulgaris HOM05D000445 ORTHO05D000314 8.5e-16 86.7 68 67.6
Gohir.D10G110850 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.5e-16 86.7 70 58.6
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.1e-15 86.3 62 67.7
Solyc10g018980.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.5e-15 85.9 60 68.3
BraSC179t45786Z Brassica rapa HOM05D000445 ORTHO05D000314 1.9e-15 85.5 68 66.2
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.9e-15 85.5 68 61.8
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.9e-15 85.5 68 61.8
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 5.5e-15 84.0 66 63.6
Gohir.D02G149651 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.7e-14 81.6 60 68.3
arahy.Tifrunner.gnm1.ann1.9A3TMW Arachis hypogaea HOM05D000445 ORTHO05D000314 3.6e-14 81.3 60 68.3
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 3.6e-14 81.3 68 66.2
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 4.7e-14 80.9 62 69.4
Solyc09g031840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.7e-14 80.9 60 68.3
EL10Ac8g19269 Beta vulgaris HOM05D000445 ORTHO05D000314 1.0e-13 79.7 59 67.8
TPR.G25940 Trifolium pratense HOM05D000445 ORTHO05D000314 1.4e-13 79.3 64 64.1
FAN18G1965 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.8e-13 79.0 60 65.0
Solyc04g050840.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.0e-13 78.2 60 65.0
BraSC138t45546Z Brassica rapa HOM05D000445 ORTHO05D000314 4.0e-13 77.8 60 68.3
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-13 77.4 69 63.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-13 77.4 69 63.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-13 77.4 69 63.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-13 77.4 69 63.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 5.2e-13 77.4 69 63.8
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 6.8e-13 77.0 55 69.1
FAN08G3077 Fragaria x ananassa HOM05D000445 ORTHO05D000314 8.8e-13 76.6 47 74.5
HanXRQChr00c0585g0576241 Helianthus annuus HOM05D000445 ORTHO05D000314 1.2e-12 76.3 47 74.5
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.6e-12 75.1 69 62.3
HanXRQChr00c0448g0574801 Helianthus annuus HOM05D000445 ORTHO05D000314 2.6e-12 75.1 61 65.6
Gorai.005G167600 Gossypium raimondii HOM05D000445 ORTHO05D000314 4.4e-12 74.3 60 65.0
HanXRQChr11g0326541 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-12 73.9 47 70.2
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.3e-11 72.8 68 61.8
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 2.2e-11 72.0 48 68.8
Migut.M00451 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.8e-11 71.6 60 65.0
arahy.Tifrunner.gnm1.ann1.BS87Z8 Arachis hypogaea HOM05D000445 ORTHO05D000314 3.7e-11 71.2 54 64.8
Nitab4.5_0002093g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.3e-11 70.5 54 66.7
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.1e-10 69.7 68 60.3
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.4e-10 69.3 53 62.3
Lsat_1_v5_gn_7_82600 Lactuca sativa HOM05D000445 ORTHO05D000314 2.4e-10 68.6 47 68.1
Hund19326 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.4e-10 68.6 60 65.0
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.4e-10 68.6 60 65.0
Solyc05g047670.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.3e-10 67.4 55 60.0
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 2.0e-09 65.5 43 72.1
Nitab4.5_0003101g0130 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.5e-09 64.3 47 63.8
Solyc08g045620.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.9e-09 63.9 66 53.0
Oeu022561.1 Olea europaea HOM05D000445 ORTHO05D000314 2.2e-08 62.0 47 63.8
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-08 60.8 56 62.5
Lalb_Chr13g0292601 Lupinus albus HOM05D000445 ORTHO05D000314 1.2e-06 56.2 37 70.3
Lalb_Chr12g0206591 Lupinus albus HOM05D000445 ORTHO05D000314 1.6e-06 55.8 54 55.6
HanXRQChr00c0925g0577921 Helianthus annuus HOM05D000445 ORTHO05D000314 3.6e-06 54.7 58 53.4
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.1e-06 53.9 37 64.9
Nitab4.5_0004573g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.0e-06 53.5 40 65.0


User provided reference genes

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