Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.3e-290 1002.3 495 100.0
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.6e-227 792.7 461 84.2
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.4e-223 778.9 495 78.0
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 9.7e-217 756.9 497 74.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 6.5e-213 744.2 499 73.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.1e-211 739.2 468 77.1
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.1e-209 733.4 494 74.3
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-209 733.0 494 74.5
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.5e-209 733.0 490 73.3
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.8e-208 728.8 493 73.2
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.7e-208 728.4 469 76.1
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.3e-207 724.5 494 72.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.7e-205 719.5 490 72.2
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 2.2e-205 719.2 490 73.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.2e-205 719.2 463 76.0
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.8e-205 718.4 493 72.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 3.8e-205 718.4 488 72.3
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 5.5e-204 714.5 491 71.9
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 7.2e-204 714.1 459 74.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 1.2e-203 713.4 461 74.4
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 7.9e-203 710.7 493 71.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 7.9e-203 710.7 465 73.3
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.0e-202 710.3 476 72.9
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.0e-202 710.3 494 70.6
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.8e-202 709.5 489 70.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 3.0e-202 708.8 485 72.4
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.6e-201 705.7 495 68.7
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.6e-201 705.7 495 71.9
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-201 705.3 485 71.1
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.3e-201 705.3 485 71.1
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 5.7e-201 704.5 527 67.9
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 7.4e-201 704.1 495 68.7
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 9.7e-201 703.7 500 70.0
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.3e-200 703.4 494 70.0
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.3e-200 703.4 495 68.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.7e-200 703.0 487 70.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.2e-200 702.6 469 72.7
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.8e-200 702.2 479 71.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 8.2e-200 700.7 493 70.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.4e-199 699.9 488 70.5
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-199 699.9 472 73.3
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.8e-199 699.5 479 71.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 4.1e-199 698.4 494 69.6
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.1e-199 698.4 467 72.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 7.0e-199 697.6 490 70.0
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.0e-199 697.6 461 74.6
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 7.0e-199 697.6 463 71.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.6e-198 696.4 487 70.8
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.5e-198 695.3 475 70.9
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.5e-198 695.3 471 70.9
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.7e-197 693.0 483 69.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.8e-197 691.8 493 69.0
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 9.4e-196 687.2 453 73.7
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 9.4e-196 687.2 472 69.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 1.6e-195 686.4 475 69.3
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.1e-195 686.0 461 71.4
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 4.7e-195 684.9 472 70.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 6.1e-195 684.5 472 69.9
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 6.1e-195 684.5 462 70.1
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.0e-195 684.1 467 71.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.8e-192 675.6 461 70.3
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.7e-192 675.2 463 70.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 2.4e-191 672.5 463 69.8
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 5.3e-191 671.4 455 70.3
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.5e-190 668.7 469 68.9
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 4.5e-190 668.3 427 76.3
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.7e-189 666.4 494 66.4
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.1e-188 663.7 465 68.4
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.9e-188 662.9 501 65.1
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.9e-188 662.9 470 67.7
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 3.2e-188 662.1 493 64.5
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.2e-188 661.8 572 59.3
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.5e-188 661.4 498 65.7
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 5.5e-188 661.4 485 68.2
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 7.2e-188 661.0 468 67.9
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 7.2e-188 661.0 493 65.7
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 9.4e-188 660.6 487 66.3
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.2e-187 660.2 493 66.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.6e-187 659.8 461 69.6
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.7e-187 659.1 463 67.6
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.6e-187 658.7 462 68.2
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-187 658.3 435 72.9
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.1e-187 657.9 485 65.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.0e-187 657.5 520 63.5
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.4e-186 656.8 454 68.1
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.0e-186 655.2 485 65.6
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 8.8e-186 654.1 479 66.0
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.2e-185 653.7 475 66.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.5e-185 653.3 474 68.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.0e-185 652.9 460 68.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 7.5e-185 651.0 470 65.5
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 8.3e-184 647.5 454 67.8
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.3e-184 647.5 449 68.8
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 8.3e-184 647.5 463 68.3
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.8e-183 646.4 492 64.2
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.1e-183 645.6 460 67.6
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.5e-182 641.7 503 64.6
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.0e-181 640.6 464 66.6
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.0e-181 640.6 464 66.6
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.0e-181 640.6 464 66.6
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.7e-181 639.8 531 59.7
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 3.8e-181 638.6 404 75.7
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.8e-181 638.6 457 66.5
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 5.0e-181 638.3 459 67.5
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 5.0e-181 638.3 439 69.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 8.6e-181 637.5 439 69.0
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 8.6e-181 637.5 446 68.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.5e-180 636.7 467 66.6
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.5e-180 634.0 414 73.7
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.6e-179 633.3 471 66.0
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.6e-179 633.3 467 66.4
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 4.7e-179 631.7 482 63.9
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 8.8e-178 627.5 495 63.6
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.2e-177 627.1 462 65.8
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.4e-177 625.5 492 66.3
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 4.4e-177 625.2 504 62.1
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 4.4e-177 625.2 505 60.4
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 4.4e-177 625.2 429 71.6
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.7e-177 624.8 374 77.8
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.5e-177 624.4 515 61.9
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.4e-175 619.4 470 63.8
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.7e-174 615.9 493 61.9
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 4.5e-174 615.1 446 65.5
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.3e-173 612.8 489 62.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 5.0e-173 611.7 556 56.5
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 7.3e-172 607.8 466 64.2
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 9.8e-169 597.4 423 66.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.4e-167 593.6 499 60.7
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.2e-167 590.9 636 50.5
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.7e-165 586.6 435 68.0
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.1e-162 577.4 436 63.8
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-160 570.1 463 62.4
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 2.2e-160 569.7 415 68.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.0e-150 535.0 465 58.1
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 9.2e-143 511.1 502 51.6
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 5.6e-140 501.9 481 52.2
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.9e-138 495.0 364 66.5
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.4e-137 492.7 481 53.8
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.9e-135 486.9 334 72.8
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.6e-131 473.8 474 46.8
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 9.0e-130 468.0 457 51.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 3.3e-124 449.5 416 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 2.3e-117 426.8 487 46.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 3.7e-115 419.5 347 61.1
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.3e-103 378.3 264 70.1
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.1e-82 311.6 323 49.8
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 5.9e-73 279.3 214 62.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-67 261.2 220 60.9
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 1.4e-53 214.9 212 53.8
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 2.4e-50 204.1 151 63.6
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.2e-41 175.3 319 35.1
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 6.0e-41 172.9 100 81.0
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.7e-40 171.4 117 68.4
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 4.7e-38 163.3 616 26.6
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 4.4e-36 156.8 149 56.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-32 145.2 111 68.5
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 5.1e-32 143.3 111 67.6
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 9.5e-31 139.0 110 60.0
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.6e-28 129.4 86 67.4
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 7.1e-26 122.9 78 70.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.5e-23 115.2 63 79.4
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 1.9e-23 114.8 99 53.5
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.1e-21 107.5 62 75.8
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 9.9e-20 102.4 64 71.9
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.4e-19 99.8 110 55.5
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.3e-16 92.0 70 68.6
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.2e-14 83.2 86 55.8
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 3.5e-09 67.4 74 54.1
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 3.0e-08 64.3 74 52.7
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 3.9e-08 63.9 40 70.0
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.5e-07 62.0 60 56.7
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 3.3e-07 60.8 59 40.7
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 4.3e-07 60.5 39 69.2
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 1.3e-06 58.9 59 44.1
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 2.1e-06 58.2 59 42.4


User provided reference genes

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