Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 5.0e-156 554.7 341 100.0
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 1.9e-94 350.1 325 65.5
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 1.6e-93 347.1 343 61.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.6e-72 276.6 318 58.5
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 1.2e-69 267.7 333 55.0
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 4.7e-69 265.8 327 57.5
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 7.9e-69 265.0 327 57.8
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.8e-65 253.8 325 57.5
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 5.0e-63 245.7 334 43.4
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 1.5e-62 244.2 318 56.9
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 1.5e-59 234.2 335 40.6
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.8e-57 227.3 310 49.4
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.2e-56 224.6 310 48.1
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 2.0e-56 223.8 335 48.1
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 2.7e-56 223.4 333 49.2
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 3.5e-56 223.0 320 38.8
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 1.3e-55 221.1 330 37.6
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 1.1e-54 218.0 335 48.1
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.2e-53 214.5 330 43.3
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.6e-53 214.2 338 51.2
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 2.1e-53 213.8 297 52.5
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 2.7e-53 213.4 324 45.4
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 8.8e-52 208.4 305 39.3
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 1.5e-51 207.6 327 54.4
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 3.4e-51 206.5 293 48.1
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 5.7e-51 205.7 300 38.0
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 1.3e-50 204.5 294 51.7
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 4.8e-50 202.6 330 45.5
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 6.3e-50 202.2 297 47.1
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 3.1e-49 199.9 307 46.3
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 3.1e-49 199.9 307 46.3
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 9.1e-49 198.4 330 44.2
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 2.7e-48 196.8 336 44.6
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 2.9e-47 193.4 343 44.3
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 1.1e-46 191.4 307 45.6
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 1.1e-46 191.4 307 45.6
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 1.9e-46 190.7 330 44.2
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 2.5e-46 190.3 306 36.6
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 3.2e-46 189.9 343 47.8
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 5.5e-46 189.1 337 45.7
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 4.7e-45 186.0 314 44.6
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 1.8e-44 184.1 143 65.0
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 1.8e-44 184.1 307 45.6
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 4.0e-44 183.0 331 46.2
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 4.0e-44 183.0 331 46.2
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.5e-43 181.0 328 44.8
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 2.0e-43 180.6 296 44.9
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 7.5e-43 178.7 306 44.1
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 3.7e-42 176.4 156 59.0
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 3.7e-42 176.4 155 58.1
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 6.3e-42 175.6 317 35.6
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 6.3e-42 175.6 333 51.4
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 5.4e-41 172.6 324 43.5
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.6e-40 171.0 338 46.7
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 1.0e-39 168.3 347 45.8
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 1.3e-39 167.9 333 42.3
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 1.6e-37 161.0 298 48.3
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 2.8e-37 160.2 331 45.3
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 6.8e-36 155.6 303 43.2
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 4.4e-35 152.9 332 41.9
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 1.4e-33 147.9 332 46.4
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 5.4e-33 146.0 325 39.7
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 7.0e-33 145.6 197 59.4
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 1.7e-31 141.0 304 47.0
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 3.9e-31 139.8 304 40.8
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 3.9e-31 139.8 297 39.4
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 2.5e-30 137.1 331 41.1
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 7.3e-30 135.6 309 37.5
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 3.6e-29 133.3 313 39.9
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 3.6e-29 133.3 285 41.1
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.0e-28 131.7 328 39.9
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 8.9e-28 128.6 160 40.6
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 1.7e-26 124.4 296 36.8
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 2.9e-26 123.6 309 36.2
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 6.4e-26 122.5 131 49.6
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 1.1e-25 121.7 148 43.9
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 1.4e-25 121.3 309 36.2
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 4.1e-25 119.8 193 58.5
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 5.6e-22 109.4 182 37.9
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 1.6e-21 107.8 135 43.7
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 8.1e-21 105.5 331 34.4
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 5.2e-20 102.8 117 45.3
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 5.2e-20 102.8 273 28.2
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 3.4e-19 100.1 176 35.8
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 4.4e-19 99.8 125 40.8
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 4.9e-18 96.3 169 33.1
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.6e-13 81.3 98 39.8
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 2.1e-13 80.9 98 39.8
Gohir.D07G184750 Gossypium hirsutum HOM05D007655 ORTHO05D009698 3.4e-11 73.6 107 43.9
Gorai.001G205200 Gossypium raimondii HOM05D007655 ORTHO05D009698 2.2e-10 70.9 101 42.6
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 2.4e-09 67.4 147 29.3
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 3.2e-09 67.0 164 25.0
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 1.1e-06 58.5 68 50.0


User provided reference genes

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