Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1327.4 678 100.0
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1081.2 700 80.1
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1077.4 681 81.4
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.3e-304 1049.3 680 80.4
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 7.4e-284 980.3 676 75.1
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 1.8e-282 975.7 680 73.5
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 4.5e-281 971.1 680 74.1
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 2.2e-280 968.8 680 74.3
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 6.5e-280 967.2 680 73.2
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 1.9e-279 965.7 680 73.5
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 2.5e-276 955.3 679 73.0
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 2.5e-276 955.3 676 72.3
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 4.8e-275 951.0 680 72.5
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.1e-274 949.9 676 71.9
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.8e-274 949.1 676 71.9
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 6.9e-274 947.2 679 72.6
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 9.0e-274 946.8 680 72.2
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 7.6e-273 943.7 675 72.1
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 2.2e-272 942.2 680 71.6
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 3.8e-272 941.4 677 72.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 5.0e-272 941.0 676 72.6
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 8.4e-272 940.3 675 73.5
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 1.8e-269 932.6 680 71.0
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 1.8e-269 932.6 680 71.0
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.8e-269 932.6 674 71.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 9.7e-268 926.8 680 70.0
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.7e-268 926.8 674 70.8
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.3e-267 926.4 674 70.8
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 1.3e-267 926.4 677 70.2
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.8e-267 925.2 678 69.9
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.7e-267 924.9 688 69.0
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 1.8e-266 922.5 677 71.5
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.1e-266 921.4 688 68.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 5.3e-266 921.0 688 69.3
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 5.3e-266 921.0 680 70.6
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-265 917.9 688 68.9
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 7.7e-265 917.1 680 70.0
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-263 912.9 688 68.5
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 1.9e-263 912.5 718 67.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 2.7e-262 908.7 680 70.0
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 6.7e-261 904.0 678 69.0
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 8.8e-261 903.7 682 69.9
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 1.7e-259 899.4 689 68.2
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.7e-259 899.4 677 69.1
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 4.8e-259 897.9 685 69.2
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 6.3e-259 897.5 691 69.0
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 1.8e-258 896.0 678 68.6
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 1.5e-257 892.9 706 66.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 2.6e-257 892.1 680 68.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 1.3e-256 889.8 683 68.4
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 2.2e-256 889.0 679 69.1
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.9e-256 888.6 680 69.9
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 2.9e-256 888.6 680 67.6
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 3.8e-256 888.3 680 66.9
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 2.5e-255 885.6 681 68.3
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 4.2e-255 884.8 680 68.1
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 5.5e-255 884.4 680 67.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 7.2e-255 884.0 680 68.8
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 3.6e-254 881.7 680 68.2
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 4.7e-254 881.3 679 67.3
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.5e-252 876.3 680 67.9
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 2.6e-252 875.5 680 67.6
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 2.6e-252 875.5 680 67.6
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 2.6e-252 875.5 680 67.6
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 4.4e-252 874.8 680 67.2
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 7.4e-252 874.0 681 67.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 9.7e-252 873.6 680 67.6
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 9.7e-252 873.6 680 67.6
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 1.7e-251 872.8 678 68.0
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 3.7e-251 871.7 680 67.8
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.4e-250 869.0 679 65.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 4.1e-250 868.2 680 64.9
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 4.1e-250 868.2 684 67.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 2.6e-249 865.5 676 65.4
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.6e-249 865.5 679 66.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 1.3e-248 863.2 686 66.9
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.7e-248 862.8 680 65.7
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 1.9e-247 859.4 681 64.5
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 2.5e-247 859.0 678 66.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 4.2e-247 858.2 683 67.1
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 7.2e-247 857.4 684 66.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 4.7e-246 854.7 683 66.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 2.3e-245 852.4 683 66.5
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 2.3e-245 852.4 683 66.5
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 4.0e-245 851.7 710 62.4
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 2.0e-244 849.4 681 64.3
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 4.8e-243 844.7 680 65.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 1.0e-240 837.0 697 61.5
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 2.2e-240 835.9 677 66.3
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 3.4e-236 822.0 677 64.7
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 2.8e-235 818.9 617 69.7
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 3.5e-233 812.0 768 59.6
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 7.7e-233 810.8 607 70.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 4.2e-231 805.1 687 63.0
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 1.5e-228 796.6 682 62.2
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.6e-228 795.8 701 61.8
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 6.6e-224 781.2 681 62.0
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 4.1e-218 761.9 473 82.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 7.8e-217 757.7 681 60.9
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 2.0e-212 743.0 691 57.9
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 4.4e-212 741.9 676 58.0
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 6.0e-209 731.5 728 56.0
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 3.4e-196 689.1 658 58.4
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 8.1e-190 667.9 542 66.8
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.1e-181 641.0 684 53.2
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 8.1e-166 588.2 678 49.1
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.2e-163 580.1 676 48.7
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 8.7e-152 541.6 690 48.4
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 9.1e-149 531.6 410 68.0
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 6.5e-147 525.4 414 66.9
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.8e-144 517.3 410 67.1
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 3.4e-140 503.1 580 48.8
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 3.3e-135 486.5 363 66.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.8e-128 464.2 367 64.0
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 3.6e-121 439.9 707 39.7
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.5e-114 417.2 718 38.4
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 3.6e-113 413.3 722 38.1
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-112 411.0 295 69.2
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.7e-108 397.1 295 68.1
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.4e-101 374.0 691 38.4
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 5.0e-99 366.3 270 68.1
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-98 364.4 344 57.3
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.6e-97 361.3 269 67.3
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.3e-90 337.0 391 52.4
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.6e-84 318.2 229 69.0
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 1.7e-83 314.7 211 77.3
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.4e-77 295.0 297 54.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.7e-75 288.1 263 58.9
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 3.3e-74 283.9 209 71.8
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.1e-69 266.2 208 65.4
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.5e-68 263.8 233 61.8
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.4e-64 251.9 803 27.4
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 2.4e-64 251.1 221 61.5
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 6.4e-62 243.0 202 63.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-58 231.5 184 65.8
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 4.8e-57 226.9 211 58.8
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 9.9e-55 219.2 248 51.2
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 3.8e-54 217.2 180 60.6
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 5.5e-45 186.8 159 61.6
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-40 172.2 133 71.4
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 1.0e-30 139.4 106 62.3
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-29 133.3 126 58.7
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.6e-28 131.0 112 61.6
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-21 108.6 80 62.5
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.4e-21 106.3 92 57.6
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 9.4e-21 106.3 92 55.4
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-20 105.9 76 64.5
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-20 105.9 76 64.5
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-20 105.9 76 64.5
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-19 102.4 76 63.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.0e-19 101.3 71 64.8
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 8.8e-19 99.8 89 58.4
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.7e-17 94.4 239 33.1
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 6.7e-11 73.6 127 44.1
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 9.7e-10 69.7 72 48.6
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-09 68.9 46 67.4


User provided reference genes

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