Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 4.6e-28 127.1 61 100.0
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 9.7e-18 92.8 50 88.0
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 9.7e-18 92.8 48 91.7
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.1e-16 87.4 50 84.0
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.1e-16 87.4 50 84.0
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.1e-16 87.4 50 84.0
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 6.9e-16 86.7 47 89.4
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 6.9e-16 86.7 56 78.6
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 9.0e-16 86.3 56 78.6
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.2e-15 85.9 48 85.4
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 1.5e-15 85.5 48 85.4
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.0e-15 85.1 47 87.2
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 3.4e-15 84.3 47 85.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 3.4e-15 84.3 47 85.1
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 3.4e-15 84.3 47 83.0
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 3.4e-15 84.3 48 83.3
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 3.4e-15 84.3 48 81.2
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.5e-15 84.0 47 85.1
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 4.5e-15 84.0 47 85.1
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 5.9e-15 83.6 47 85.1
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 7.7e-15 83.2 47 85.1
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.0e-14 82.8 48 81.2
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.0e-14 82.8 47 85.1
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.3e-14 82.4 50 78.0
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.7e-14 82.0 47 83.0
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 1.7e-14 82.0 45 86.7
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.7e-14 82.0 47 83.0
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.7e-14 82.0 47 83.0
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 1.7e-14 82.0 47 83.0
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 2.2e-14 81.6 47 83.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 2.9e-14 81.3 47 83.0
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 3.8e-14 80.9 47 83.0
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 5.0e-14 80.5 48 81.2
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 5.0e-14 80.5 47 83.0
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 5.0e-14 80.5 47 78.7
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 5.0e-14 80.5 48 81.2
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 6.5e-14 80.1 45 84.4
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 6.5e-14 80.1 47 83.0
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 6.5e-14 80.1 48 79.2
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 8.5e-14 79.7 47 80.9
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 8.5e-14 79.7 48 79.2
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 8.5e-14 79.7 47 83.0
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.1e-13 79.3 48 77.1
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 1.1e-13 79.3 48 77.1
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 1.1e-13 79.3 47 83.0
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.1e-13 79.3 47 80.9
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-13 79.3 47 83.0
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-13 79.3 47 83.0
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-13 79.3 47 83.0
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.4e-13 79.0 47 78.7
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.4e-13 79.0 49 79.6
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.4e-13 79.0 47 78.7
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 1.9e-13 78.6 45 75.6
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 2.5e-13 78.2 48 77.1
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 2.5e-13 78.2 47 80.9
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 3.2e-13 77.8 52 73.1
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 3.2e-13 77.8 48 75.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.2e-13 77.8 47 80.9
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 4.2e-13 77.4 45 77.8
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 4.2e-13 77.4 48 77.1
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 4.2e-13 77.4 48 75.0
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 4.2e-13 77.4 47 78.7
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.5e-13 77.0 47 76.6
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 5.5e-13 77.0 47 78.7
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 5.5e-13 77.0 47 78.7
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 5.5e-13 77.0 47 78.7
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 5.5e-13 77.0 47 76.6
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 9.4e-13 76.3 45 75.6
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 9.4e-13 76.3 47 74.5
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.6e-12 75.5 47 76.6
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.1e-12 75.1 47 72.3
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.1e-12 75.1 47 76.6
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 2.7e-12 74.7 47 76.6
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.6e-12 74.3 45 71.1
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.1e-12 73.6 47 72.3
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 6.1e-12 73.6 47 76.6
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 7.9e-12 73.2 48 70.8
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 7.9e-12 73.2 47 72.3
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 7.9e-12 73.2 48 70.8
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.0e-11 72.8 47 74.5
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.0e-11 72.8 47 74.5
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-11 72.4 47 74.5
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.4e-11 72.4 47 72.3
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 2.3e-11 71.6 48 62.5
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 2.3e-11 71.6 47 68.1
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 2.3e-11 71.6 47 68.1
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 3.0e-11 71.2 47 66.0
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 3.9e-11 70.9 47 72.3
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 3.9e-11 70.9 43 74.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.9e-11 70.9 47 72.3
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 5.1e-11 70.5 47 68.1
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 6.7e-11 70.1 47 68.1
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.1e-10 69.3 48 60.4
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 2.6e-10 68.2 48 66.7
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 5.7e-10 67.0 47 63.8
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.7e-09 64.3 43 69.8
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 3.7e-09 64.3 48 64.6
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-08 62.8 43 62.8
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.1e-08 62.8 43 62.8
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.1e-08 61.2 44 65.9


User provided reference genes

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