Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 0.0e+00 2625.1 1443 100.0
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 0.0e+00 1558.9 1509 61.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1481.1 1538 59.5
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 0.0e+00 1453.3 1500 57.3
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.9e-298 1029.2 1422 46.7
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.1e-281 974.2 1512 44.3
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 4.1e-276 955.7 1344 45.2
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.6e-272 943.7 1332 47.0
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.2e-272 941.8 1332 46.8
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 7.8e-267 924.9 1491 42.1
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 5.6e-265 918.7 1300 45.9
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 5.2e-263 912.1 1321 44.3
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 6.4e-261 905.2 1308 44.3
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 2.8e-256 889.8 1325 45.8
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 1.5e-254 884.0 1317 44.5
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 9.9e-254 881.3 1313 46.4
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 8.7e-250 868.2 1525 41.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.6e-248 862.8 1332 43.3
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 3.4e-246 856.3 1528 39.4
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 2.4e-244 850.1 1528 39.4
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 1.6e-243 847.4 1534 40.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 4.6e-243 845.9 1278 44.5
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 4.0e-239 832.8 1321 42.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 3.4e-238 829.7 1321 41.9
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 4.3e-233 812.8 1507 41.4
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.0e-230 803.9 1537 40.1
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 7.6e-230 802.0 1325 41.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 6.5e-229 798.9 1505 38.3
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.2e-228 796.6 1327 43.8
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.7e-224 783.1 1323 42.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.4e-222 776.5 1509 39.9
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 5.9e-222 775.8 1513 41.9
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.0e-221 775.0 1321 42.5
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.4e-220 771.2 1329 42.0
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.9e-220 770.8 1510 39.9
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.4e-220 768.5 1510 39.8
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 1.2e-219 768.1 1340 42.3
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 1.8e-218 764.2 1521 38.8
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 2.3e-218 763.8 1512 39.7
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 7.4e-217 758.8 1508 39.0
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.7e-211 740.3 1509 38.1
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 7.9e-211 738.8 1340 42.2
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 3.0e-210 736.9 990 53.1
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 2.6e-206 723.8 1318 40.6
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 4.0e-202 709.9 1142 44.5
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.5e-198 696.4 1293 40.3
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.5e-196 691.4 1403 38.5
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.7e-192 677.9 1338 38.8
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 1.2e-185 655.2 1528 35.7
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 5.7e-185 652.9 1208 40.6
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.6e-179 634.8 1351 37.4
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.9e-168 596.7 1388 35.4
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 2.6e-153 547.7 1303 34.6
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 4.6e-150 537.0 1338 35.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 6.0e-150 536.6 1278 35.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 6.6e-149 533.1 1145 37.9
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 4.4e-145 520.4 1308 34.1
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 7.6e-145 519.6 1220 35.7
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.4e-143 514.6 1552 32.7
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 9.3e-143 512.7 1208 36.4
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 3.5e-142 510.8 1302 34.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 5.8e-137 493.4 1534 31.4
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 1.3e-133 482.3 1198 34.6
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 4.0e-130 470.7 593 48.4
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 6.0e-118 430.3 1312 32.6
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 8.2e-115 419.9 1314 31.3
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-112 411.8 1237 32.7
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.1e-106 391.0 695 37.8
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-103 382.5 1115 32.6
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 3.6e-102 377.9 1307 31.4
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 7.9e-102 376.7 306 62.7
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 7.9e-102 376.7 1313 31.6
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.7e-94 351.7 917 33.6
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 6.7e-93 347.1 701 35.8
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 7.4e-92 343.6 683 36.2
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.8e-91 340.9 1256 30.9
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.1e-90 338.2 692 36.4
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 9.4e-87 326.6 1036 31.4
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.2e-86 326.2 712 34.1
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.4e-85 322.8 1316 28.9
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 1.7e-83 315.8 834 33.3
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 4.2e-79 301.2 1329 28.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.0e-76 292.4 1241 29.3
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.7e-75 289.3 1026 30.6
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.8e-72 278.1 662 33.1
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 4.1e-66 258.1 410 40.0
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 4.0e-61 241.5 1056 29.8
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 3.7e-59 235.0 1247 28.8
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 4.9e-59 234.6 1228 27.2
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 1.8e-58 232.6 1312 28.0
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 4.1e-58 231.5 620 33.7
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 8.9e-53 213.8 1297 27.4
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 7.5e-52 210.7 1134 28.0
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 3.5e-49 201.8 1178 27.1
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 3.0e-48 198.7 1209 27.2
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.3e-47 194.9 520 30.8
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.6e-46 191.8 1080 27.8
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.0e-40 173.7 1216 26.8
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 4.0e-37 161.8 491 32.4
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.6e-36 159.1 788 28.7
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 3.4e-36 158.7 1073 25.7
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.7e-35 156.4 373 34.9
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 4.9e-35 154.8 1279 24.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 9.2e-34 150.6 614 30.1
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-33 150.2 1072 24.8
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-32 146.7 404 34.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 2.3e-32 146.0 602 29.9
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.6e-31 141.4 345 36.5
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 2.8e-30 139.0 1084 26.5
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 3.6e-30 138.7 1128 25.0
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.9e-24 118.6 1105 26.6
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 1.1e-23 117.1 1261 25.3
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 5.6e-23 114.8 1279 24.1
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 9.6e-23 114.0 1109 25.4
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 1.4e-21 110.2 1263 25.3
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.1e-21 109.0 859 26.5
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.0e-21 108.6 775 27.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 9.9e-20 104.0 1089 25.1
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.9e-19 102.4 747 25.0
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 4.9e-19 101.7 378 30.2
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.2e-18 98.6 223 38.6
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.4e-18 98.2 827 26.1
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 7.1e-18 97.8 158 36.7
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.1e-17 96.3 178 34.3
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.6e-17 95.1 191 37.2
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 7.9e-17 94.4 219 34.2
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 1.0e-16 94.0 828 25.8
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.8e-16 93.2 292 31.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.7e-16 91.3 778 27.0
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.5e-15 89.4 1124 24.7
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 5.8e-12 78.2 428 25.9
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.3e-11 77.0 703 26.0
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.2e-11 76.3 151 32.5
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.9e-10 73.2 497 26.2
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 4.2e-10 72.0 132 40.9
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.6e-09 70.1 294 31.6
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 6.0e-09 68.2 43 76.7
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 7.9e-09 67.8 300 32.0
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 7.9e-09 67.8 380 27.4
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 1.3e-08 67.0 115 38.3
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.8e-08 66.6 89 38.2
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 1.8e-08 66.6 156 28.8
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 3.0e-08 65.9 266 30.1
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 3.0e-08 65.9 128 39.8
Psat0ss3759g0400 Pisum sativum HOM05D000846 ORTHO05D001340 3.9e-08 65.5 79 49.4
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.1e-08 65.1 294 30.6
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.1e-07 63.9 122 39.3
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-07 63.5 44 70.5
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.5e-07 63.5 44 70.5
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 1.9e-07 63.2 204 32.8
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 1.9e-07 63.2 570 25.1
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 5.6e-07 61.6 271 28.0
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 5.6e-07 61.6 693 24.1
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 7.4e-07 61.2 150 34.0
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 4.8e-06 58.5 290 29.7
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 4.8e-06 58.5 249 31.3


User provided reference genes

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