Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.2e-135 486.5 242 100.0
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.3e-107 392.5 242 82.6
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 5.4e-104 381.3 244 80.7
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.4e-104 381.3 244 78.7
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.5e-103 378.6 245 77.6
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 7.8e-103 377.5 242 80.6
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 7.8e-103 377.5 245 77.6
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.8e-103 377.5 245 77.6
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.8e-103 377.5 245 77.6
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.3e-102 376.7 244 78.3
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 3.9e-102 375.2 244 79.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 8.6e-102 374.0 247 76.9
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 4.3e-101 371.7 244 78.3
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 5.6e-101 371.3 240 78.8
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.3e-101 370.9 245 76.3
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 9.5e-101 370.5 244 77.5
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 9.5e-101 370.5 240 79.6
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 6.2e-100 367.9 241 78.0
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 6.8e-99 364.4 249 75.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 4.4e-98 361.7 244 75.0
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 7.6e-98 360.9 244 76.6
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.7e-97 359.8 248 75.4
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 4.9e-97 358.2 244 76.2
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.1e-96 354.4 225 79.1
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.6e-95 353.2 244 76.2
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.7e-95 352.4 246 76.4
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 4.6e-95 351.7 244 75.8
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 4.6e-95 351.7 244 75.8
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.0e-94 350.5 244 76.6
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 5.1e-94 348.2 244 75.0
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.1e-94 348.2 244 74.6
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 8.6e-94 347.4 244 74.2
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-93 347.1 244 71.3
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 3.3e-93 345.5 245 73.9
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 5.6e-93 344.7 244 74.6
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 5.6e-93 344.7 222 78.8
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 7.3e-93 344.4 243 73.3
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 9.6e-93 344.0 244 76.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 8.1e-92 340.9 244 73.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.1e-91 340.5 247 72.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.4e-91 340.1 252 71.8
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 4.0e-91 338.6 243 72.8
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 6.8e-91 337.8 246 73.6
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 1.2e-90 337.0 245 73.9
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.0e-90 336.3 242 72.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 2.0e-90 336.3 244 72.5
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.4e-90 335.1 244 68.9
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.4e-90 335.1 222 74.8
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 4.9e-89 331.6 244 70.9
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 4.9e-89 331.6 250 70.8
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 6.4e-89 331.3 245 70.2
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.1e-88 330.5 218 76.6
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 1.1e-88 330.5 245 69.8
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.4e-88 330.1 255 69.8
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.4e-88 329.3 236 69.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 5.4e-88 328.2 238 73.5
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.6e-87 326.6 231 71.4
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.6e-87 326.6 215 75.8
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.1e-87 326.2 230 71.3
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.7e-87 325.9 211 73.9
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 3.5e-87 325.5 247 68.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 1.3e-86 323.6 193 82.9
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 3.0e-86 322.4 244 68.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.0e-86 322.4 244 68.9
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 3.0e-86 322.4 244 68.4
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.9e-86 322.0 204 78.4
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 3.9e-86 322.0 244 68.4
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.1e-85 320.5 253 68.8
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 3.3e-85 318.9 244 68.9
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 3.3e-85 318.9 244 68.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 3.3e-85 318.9 245 67.8
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 9.6e-85 317.4 244 68.0
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.8e-84 315.8 248 66.5
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 3.6e-84 315.5 244 66.8
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.8e-84 315.1 247 67.2
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 4.8e-84 315.1 242 68.2
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 6.2e-84 314.7 247 68.0
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 8.1e-84 314.3 221 73.8
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 2.4e-83 312.8 221 71.9
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 4.0e-83 312.0 244 67.2
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 6.9e-83 311.2 248 67.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 2.0e-82 309.7 247 67.2
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 5.8e-82 308.1 216 71.3
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 1.7e-81 306.6 189 78.8
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.9e-81 305.1 233 67.0
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 6.4e-81 304.7 226 70.8
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 1.1e-80 303.9 244 68.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 1.9e-80 303.1 249 66.7
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 3.2e-80 302.4 244 66.0
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 7.1e-80 301.2 249 65.1
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 9.3e-80 300.8 191 77.0
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 3.5e-79 298.9 190 74.7
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 4.6e-79 298.5 248 65.3
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 6.0e-79 298.1 219 69.9
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 6.0e-79 298.1 252 63.5
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 6.0e-79 298.1 219 71.7
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 7.9e-79 297.7 245 64.9
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 1.7e-78 296.6 250 63.6
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.3e-78 296.2 255 62.7
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 2.3e-78 296.2 193 76.2
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 3.9e-78 295.4 247 65.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 2.5e-77 292.7 250 64.4
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 4.3e-77 292.0 246 63.4
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 4.3e-77 292.0 246 63.4
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.3e-76 290.4 187 73.8
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.3e-76 290.4 250 62.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 4.8e-76 288.5 244 62.7
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 8.1e-76 287.7 194 75.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.4e-74 282.3 231 61.0
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.1e-72 277.3 189 73.0
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 1.9e-72 276.6 222 65.8
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.4e-72 275.0 254 59.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 3.9e-70 268.9 166 78.9
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 4.0e-67 258.8 175 69.7
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 1.0e-65 254.2 204 67.2
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 1.6e-63 246.9 204 67.6
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 1.0e-54 217.6 121 84.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.3e-54 216.5 120 85.8
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 1.1e-51 207.6 121 81.0
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.2e-49 199.9 183 57.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 3.6e-47 192.6 165 61.8
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.0e-46 189.5 111 79.3
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 4.3e-45 185.7 216 45.4
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.7e-44 183.7 161 54.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 9.1e-43 177.9 195 47.2
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 9.4e-40 167.9 174 50.0
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.0e-37 160.2 240 41.2
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.6e-29 133.3 176 38.1
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.8e-27 127.1 68 85.3
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 1.1e-19 101.3 121 54.5
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.1e-16 91.3 145 33.1
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 2.5e-16 90.1 104 52.9
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.6e-15 86.3 122 44.3
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.3e-12 77.8 176 32.4
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 8.0e-07 58.5 65 49.2


User provided reference genes

Program Settings