Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 6.2e-209 730.7 413 100.0
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 8.3e-129 464.5 346 76.9
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.5e-127 459.1 356 76.1
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.5e-122 443.7 357 71.4
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 3.4e-122 442.6 357 73.1
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.9e-121 439.5 332 75.3
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-120 437.6 350 74.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 3.2e-120 436.0 351 74.4
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-119 434.1 356 72.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.2e-119 434.1 328 75.9
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-118 431.0 356 71.9
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.3e-118 429.9 356 71.6
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 5.0e-118 428.7 341 72.4
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-117 427.6 341 71.8
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.6e-117 425.2 349 70.5
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 7.3e-117 424.9 347 72.6
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 6.2e-116 421.8 336 73.8
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.2e-114 417.5 350 70.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 5.8e-114 415.2 352 69.9
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-112 411.0 349 69.1
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 3.2e-112 409.5 347 71.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 5.4e-112 408.7 363 68.0
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.6e-111 407.1 350 69.7
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.7e-111 406.4 348 70.7
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 6.0e-111 405.2 327 71.9
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 6.0e-111 405.2 332 71.7
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.3e-110 403.3 340 70.9
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 5.0e-110 402.1 341 72.4
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 4.3e-109 399.1 351 68.9
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.3e-109 399.1 351 67.5
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 7.3e-109 398.3 343 69.4
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 1.6e-108 397.1 342 69.3
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.2e-107 392.1 341 68.9
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 2.0e-106 390.2 307 73.9
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.3e-105 387.5 310 72.3
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.9e-105 386.3 341 69.5
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.1e-104 384.4 289 74.4
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.1e-104 384.4 264 82.6
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.4e-104 384.0 323 69.7
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.4e-104 384.0 316 71.8
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.4e-104 382.1 295 74.9
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.6e-103 380.6 317 71.0
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 2.1e-103 380.2 351 66.7
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 2.7e-103 379.8 307 71.3
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.6e-103 379.0 349 65.3
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.0e-102 377.9 356 65.7
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.0e-102 377.9 308 70.8
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 2.3e-102 376.7 308 71.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 5.1e-102 375.6 336 66.4
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 5.1e-102 375.6 320 70.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 6.6e-102 375.2 317 70.7
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 6.6e-102 375.2 317 70.7
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.9e-101 373.6 340 66.2
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.2e-100 370.9 304 70.1
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.8e-100 369.8 335 67.8
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 4.7e-100 369.0 300 71.3
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 6.2e-100 368.6 359 64.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.2e-98 364.4 342 62.9
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 4.4e-98 362.5 353 65.4
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.8e-98 362.1 322 65.5
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 7.6e-98 361.7 317 68.5
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.7e-97 360.5 315 67.9
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 8.4e-97 358.2 339 64.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 8.4e-97 358.2 286 70.6
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.1e-96 357.8 272 75.4
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.4e-96 355.5 323 64.7
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.4e-96 355.5 323 64.7
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.2e-95 354.4 317 68.8
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.6e-95 354.0 340 65.0
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 2.1e-95 353.6 327 65.4
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 6.0e-95 352.1 289 69.2
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.0e-94 351.3 437 54.7
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 8.6e-94 348.2 350 62.0
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 3.3e-93 346.3 267 73.4
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 5.6e-93 345.5 334 63.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 9.6e-93 344.7 319 67.4
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.4e-91 340.9 329 62.9
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 3.1e-91 339.7 403 55.6
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.5e-90 337.4 278 70.5
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 7.6e-90 335.1 324 63.3
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.9e-89 333.2 281 66.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.1e-87 327.0 308 64.9
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 6.6e-86 322.0 281 68.3
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 8.1e-84 315.1 338 60.7
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.5e-82 310.8 351 57.0
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 2.6e-82 310.1 339 60.2
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 5.4e-80 302.4 359 56.5
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.2e-79 301.2 303 58.7
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.1e-76 290.4 342 55.8
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.4e-75 287.7 303 59.1
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.2e-74 284.6 268 59.7
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.1e-72 278.1 302 59.6
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 9.3e-72 275.0 326 54.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 9.3e-72 275.0 255 67.1
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.0e-70 271.6 300 57.7
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.3e-70 271.2 340 53.8
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.9e-69 267.3 336 54.8
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 3.4e-66 256.5 345 51.0
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 4.5e-66 256.1 309 54.7
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 8.4e-65 251.9 347 51.6
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 8.7e-62 241.9 349 46.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.5e-61 241.1 230 63.9
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.7e-61 239.2 260 57.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 1.8e-59 234.2 304 52.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-58 231.5 246 54.1
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 3.8e-57 226.5 335 48.1
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.6e-55 219.9 308 53.2
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 2.9e-49 200.3 338 41.4
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 7.9e-47 192.2 350 39.7
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.4e-40 171.4 331 42.3
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 2.3e-38 164.1 271 41.7
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.0e-30 138.7 166 55.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 6.7e-30 136.0 348 37.1
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.2e-28 131.0 117 59.8
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 9.4e-24 115.5 88 76.1
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.5e-21 108.2 109 58.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 5.7e-21 106.3 113 58.4
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 4.8e-20 103.2 188 43.6
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.7e-18 95.9 84 64.3
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.7e-18 95.9 84 64.3
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.6e-15 88.2 267 32.2
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.4e-14 85.1 310 29.7
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.8e-14 84.7 159 42.1
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 2.0e-13 81.3 237 32.5
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.6e-13 80.9 151 43.0
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 3.4e-13 80.5 88 54.5
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.2e-10 72.0 50 74.0
Cfa026984 Carpinus fangiana HOM05D005934 ORTHO05D005165 8.6e-09 65.9 183 28.4
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 8.0e-07 59.3 78 50.0


User provided reference genes

Program Settings