Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 8.0e-152 540.4 277 100.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 6.1e-128 461.1 276 84.1
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 5.7e-126 454.5 276 84.4
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 5.9e-123 444.5 274 81.4
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 5.6e-121 438.0 274 78.8
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.0e-119 433.7 274 77.4
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-119 433.3 274 77.4
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-119 432.2 274 77.0
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 8.9e-119 430.6 274 77.0
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 3.4e-118 428.7 274 77.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 2.9e-117 425.6 274 76.6
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 4.9e-117 424.9 274 76.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 3.2e-116 422.2 274 77.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 4.1e-116 421.8 274 77.0
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.4e-116 421.4 274 77.0
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 7.0e-116 421.0 274 76.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-115 420.2 274 76.6
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.2e-115 420.2 274 76.6
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.7e-115 419.1 274 77.7
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 4.6e-115 418.3 274 75.9
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.0e-114 417.2 272 76.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.0e-114 417.2 274 75.9
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 3.0e-114 415.6 274 74.5
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 3.9e-114 415.2 274 74.1
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.9e-114 415.2 274 75.2
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.0e-114 414.8 274 75.2
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 8.6e-114 414.1 274 76.3
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.6e-114 414.1 274 74.8
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.5e-113 413.3 274 74.5
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-113 412.1 274 74.5
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 3.3e-113 412.1 274 74.5
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 4.3e-113 411.8 274 77.0
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 2.8e-112 409.1 275 74.5
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.6e-112 408.7 270 75.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 8.1e-112 407.5 263 75.7
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.1e-111 407.1 276 76.1
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 1.4e-111 406.8 263 75.3
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.4e-111 406.8 274 73.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.4e-111 406.8 277 74.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.8e-111 406.4 263 76.8
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 2.3e-111 406.0 274 73.7
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.1e-111 405.6 277 74.7
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.0e-111 405.2 274 73.0
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 5.2e-111 404.8 275 72.4
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 5.2e-111 404.8 270 74.8
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 6.8e-111 404.4 275 72.4
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 1.2e-110 403.7 274 71.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 4.4e-110 401.7 268 74.6
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.8e-110 401.4 274 72.6
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 7.5e-110 401.0 270 74.8
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 1.7e-109 399.8 270 74.8
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.2e-109 399.4 273 71.8
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 2.9e-109 399.1 277 73.6
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 3.7e-109 398.7 275 70.9
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.7e-109 398.7 274 74.8
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 6.4e-109 397.9 274 74.1
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 8.3e-109 397.5 251 77.3
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-108 397.1 275 70.9
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 1.1e-108 397.1 277 71.8
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 1.1e-108 397.1 271 72.3
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.4e-108 396.7 275 70.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.9e-108 396.4 273 71.4
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 2.4e-108 396.0 273 71.8
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 9.2e-108 394.0 275 73.5
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 9.2e-108 394.0 273 71.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 9.2e-108 394.0 309 68.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 2.7e-107 392.5 277 70.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 3.5e-107 392.1 275 72.0
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.5e-107 392.1 273 71.4
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 7.8e-107 391.0 272 72.1
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.3e-106 390.2 248 76.2
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 1.7e-106 389.8 276 69.9
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 3.0e-106 389.0 277 71.8
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 5.1e-106 388.3 268 73.1
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 1.9e-105 386.3 323 62.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.9e-105 386.3 277 71.8
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.5e-105 386.0 270 72.6
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 5.6e-105 384.8 355 58.6
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 5.6e-105 384.8 260 73.5
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 9.5e-105 384.0 274 72.6
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.5e-105 384.0 267 72.7
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.6e-104 383.3 274 69.0
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.8e-104 382.5 263 73.0
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.8e-104 382.5 276 69.9
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 6.2e-104 381.3 248 76.6
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 8.1e-104 380.9 284 69.0
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 1.1e-103 380.6 274 67.5
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.4e-103 380.2 265 71.3
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.4e-103 380.2 270 72.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 2.3e-103 379.4 277 69.3
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.0e-103 378.6 275 69.8
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 6.8e-103 377.9 274 70.1
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 2.0e-102 376.3 252 73.4
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 5.8e-102 374.8 274 68.2
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 5.8e-102 374.8 274 68.2
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 5.8e-102 374.8 305 66.6
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.3e-101 373.6 266 71.4
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.1e-100 370.5 265 69.4
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.4e-100 370.2 275 68.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.4e-100 370.2 267 69.3
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.9e-100 369.8 275 68.0
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 4.1e-100 368.6 277 67.5
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 4.1e-100 368.6 276 65.9
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 5.4e-100 368.2 274 67.5
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 7.1e-100 367.9 274 67.2
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.2e-99 367.1 274 67.2
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.2e-99 367.1 267 68.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.6e-99 366.7 267 68.2
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.1e-99 366.3 274 66.4
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.7e-99 365.9 267 68.5
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 2.7e-99 365.9 272 67.6
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.5e-99 365.5 278 67.6
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 6.0e-99 364.8 274 66.1
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-98 363.2 271 65.7
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.7e-98 363.2 314 61.1
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 8.6e-98 360.9 278 66.2
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.9e-97 359.8 267 67.0
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.3e-97 358.6 268 67.5
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 5.2e-95 351.7 280 63.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.2e-92 342.0 274 63.1
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.2e-91 340.5 251 65.7
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.7e-90 334.3 277 62.5
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 5.6e-89 331.6 277 61.0
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 7.3e-89 331.3 274 61.3
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 9.6e-89 330.9 268 62.7
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.6e-88 330.1 277 62.5
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 4.0e-87 325.5 274 63.1
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 5.3e-87 325.1 205 77.6
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 1.5e-81 307.0 253 60.1
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.5e-78 297.0 214 70.6
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.7e-77 293.5 262 55.3
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 2.7e-75 286.2 258 58.1
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.7e-74 281.2 271 53.1
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.5e-73 280.4 279 49.8
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 9.0e-71 271.2 261 52.9
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.2e-70 270.8 277 50.2
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 5.8e-70 268.5 268 50.7
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.3e-69 267.3 277 51.6
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 1.3e-69 267.3 268 50.4
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 1.1e-68 264.2 264 50.8
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.1e-68 261.5 265 50.6
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 3.9e-66 255.8 216 60.2
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 5.1e-66 255.4 194 63.9
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.3e-64 250.8 278 53.6
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.5e-62 242.3 226 53.5
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.9e-60 236.9 182 66.5
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.7e-56 222.6 300 49.0
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 6.9e-55 218.4 172 63.4
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 4.5e-54 215.7 148 70.3
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 9.4e-52 208.0 139 72.7
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 6.1e-51 205.3 221 48.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.0e-49 200.3 204 51.5
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 4.3e-49 199.1 130 73.8
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-47 193.0 163 59.5
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 5.2e-42 175.6 268 35.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.6e-41 173.3 143 61.5
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 6.3e-32 142.1 258 33.3
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.7e-27 125.9 307 28.7
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 2.6e-25 120.2 95 67.4
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.7e-24 116.3 206 32.5
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.8e-23 114.0 76 77.6
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 7.0e-23 112.1 114 52.6
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 6.5e-21 105.5 214 29.4
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 8.0e-19 98.6 123 45.5
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 6.8e-18 95.5 276 29.0
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 3.4e-09 66.6 45 64.4
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 2.4e-07 60.5 172 33.7


User provided reference genes

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