Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.8e-251 872.1 442 100.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 3.3e-208 728.4 439 85.9
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 4.4e-205 718.0 445 82.5
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 7.6e-205 717.2 439 82.5
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 1.7e-204 716.1 442 82.4
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-203 713.4 434 83.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-202 709.5 440 82.7
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 2.7e-202 708.8 433 83.6
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.3e-201 706.4 434 83.2
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.7e-201 706.1 446 81.2
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.7e-201 706.1 440 82.5
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.1e-201 704.5 439 81.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.1e-201 704.5 439 81.1
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.6e-201 704.1 442 81.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 6.6e-201 704.1 435 83.0
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 8.7e-201 703.7 429 82.8
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 1.5e-200 703.0 427 83.4
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.5e-200 703.0 437 83.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.9e-200 702.6 442 81.4
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.9e-200 702.6 444 81.3
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 7.3e-200 700.7 437 83.1
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 2.8e-199 698.7 435 83.0
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 3.6e-199 698.4 430 82.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.8e-199 698.0 427 83.1
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 4.8e-199 698.0 448 80.1
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-198 696.4 427 82.9
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.8e-198 696.0 442 80.8
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 2.4e-198 695.7 430 82.6
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.3e-198 694.5 435 81.8
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 5.3e-198 694.5 435 81.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 9.0e-198 693.7 437 81.2
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 2.0e-197 692.6 427 82.7
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.0e-197 692.6 436 81.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.6e-197 692.2 433 80.8
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-197 691.8 427 82.4
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 3.4e-197 691.8 427 82.2
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 3.4e-197 691.8 435 80.5
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.5e-197 691.4 434 81.1
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 4.5e-197 691.4 429 82.1
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 4.5e-197 691.4 438 80.4
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.8e-197 691.0 427 82.4
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 5.8e-197 691.0 427 82.4
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.8e-197 691.0 431 83.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 9.9e-197 690.3 425 81.6
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.3e-196 689.9 427 81.5
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.2e-196 689.1 436 80.7
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 2.9e-196 688.7 435 80.2
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 2.9e-196 688.7 429 82.1
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 8.4e-196 687.2 429 80.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.1e-195 686.8 405 84.9
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.2e-195 685.3 430 80.0
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.2e-194 683.3 436 81.0
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.6e-194 681.4 438 81.5
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.0e-194 681.0 430 81.4
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 7.9e-194 680.6 443 79.5
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 1.0e-193 680.2 430 80.0
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 1.3e-193 679.9 427 80.3
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.3e-193 679.9 430 79.5
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.8e-193 679.5 430 80.5
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.8e-193 679.5 430 80.2
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 1.8e-193 679.5 430 80.2
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 2.3e-193 679.1 442 78.5
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 3.0e-193 678.7 388 87.1
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-193 678.3 427 80.8
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 6.7e-193 677.6 427 80.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 6.7e-193 677.6 430 79.3
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 8.7e-193 677.2 427 80.6
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.5e-192 676.4 427 80.6
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.9e-192 676.0 427 80.6
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.9e-192 676.0 430 80.7
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.5e-192 675.6 427 80.6
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.3e-192 675.2 482 73.7
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 4.3e-192 674.9 427 80.3
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 4.3e-192 674.9 427 80.3
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 4.3e-192 674.9 427 80.6
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 7.4e-192 674.1 427 80.1
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 7.4e-192 674.1 427 80.1
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 7.4e-192 674.1 427 80.1
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-191 673.3 428 79.2
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-191 673.3 437 79.2
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.6e-191 672.9 426 80.3
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.6e-191 672.9 410 82.0
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.1e-191 672.5 428 79.7
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.1e-191 672.5 434 78.1
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 4.8e-191 671.4 436 78.2
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 4.8e-191 671.4 430 79.5
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.1e-191 670.6 433 79.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 1.1e-190 670.2 436 78.7
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.4e-190 669.8 438 78.3
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.8e-190 669.5 426 79.3
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.8e-190 669.5 466 75.5
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 2.4e-190 669.1 436 78.7
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.1e-190 668.7 427 79.6
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 4.0e-190 668.3 433 76.4
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.2e-189 666.8 433 79.7
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.5e-189 666.4 436 78.2
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 2.6e-189 665.6 427 80.1
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.6e-189 665.6 456 75.9
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 2.6e-189 665.6 430 78.1
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.4e-189 665.2 428 78.0
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 7.6e-189 664.1 397 82.1
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 7.6e-189 664.1 427 79.6
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.9e-189 663.7 458 75.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.9e-188 662.1 436 78.4
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.9e-188 662.1 429 78.6
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.8e-188 661.8 427 80.1
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.9e-187 659.4 431 77.7
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.3e-187 657.1 427 78.2
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.2e-186 656.8 431 77.3
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 3.5e-186 655.2 429 79.3
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 3.0e-185 652.1 439 76.5
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.9e-185 651.7 391 82.1
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 9.6e-184 647.1 428 77.6
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.8e-183 645.6 423 78.5
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.7e-183 645.2 429 76.9
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 6.2e-183 644.4 516 67.4
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 3.4e-181 638.6 428 77.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 4.9e-180 634.8 435 76.1
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.0e-177 627.1 550 63.6
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.1e-176 623.6 434 74.4
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.7e-176 621.3 426 75.8
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 5.7e-176 621.3 425 74.6
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.7e-175 618.6 426 75.4
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-173 613.2 431 73.8
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.5e-173 611.7 349 89.1
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 4.5e-173 611.7 398 77.1
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 4.5e-173 611.7 407 74.0
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.1e-171 607.1 383 78.6
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 5.5e-171 604.7 432 73.1
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 3.6e-170 602.1 380 79.5
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.0e-169 600.5 393 78.9
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 9.1e-166 587.4 390 73.3
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.2e-165 587.0 342 83.9
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.2e-165 587.0 385 74.0
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 8.5e-164 580.9 364 83.2
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 1.9e-163 579.7 361 81.4
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 5.5e-155 551.6 394 70.6
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.0e-153 547.4 343 81.3
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.0e-152 543.1 336 80.7
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 9.1e-150 534.3 342 79.5
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 5.9e-149 531.6 375 70.9
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.4e-145 520.4 378 70.1
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 2.6e-144 516.2 350 74.0
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 3.4e-144 515.8 423 64.5
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 4.1e-142 508.8 426 65.0
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 7.7e-141 504.6 366 71.0
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.7e-140 503.4 348 73.9
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.0e-129 467.6 261 88.1
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 3.3e-123 446.0 329 66.6
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 5.2e-121 438.7 295 74.9
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.5e-120 437.2 269 82.2
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 9.5e-115 417.9 380 60.3
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 7.8e-109 398.3 234 86.3
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.1e-94 351.3 243 75.7
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.3e-92 344.4 232 75.9
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 1.3e-84 317.8 187 84.5
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.9e-83 313.9 181 83.4
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 4.8e-82 309.3 355 51.5
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 4.8e-82 309.3 362 46.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.9e-68 263.1 154 81.2
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.4e-64 250.0 221 66.1
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.5e-63 245.7 190 64.7
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.5e-63 245.7 190 64.7
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.3e-60 238.0 146 78.8
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.3e-59 233.4 244 59.4
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.9e-46 191.0 156 69.2
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 9.7e-43 178.7 101 87.1
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.6e-32 144.8 220 46.8
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.5e-32 143.7 299 40.8
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 5.2e-28 129.8 82 80.5
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 2.7e-21 107.5 74 78.4
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 1.0e-20 105.5 89 65.2
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 1.2e-19 102.1 63 82.5
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 1.2e-19 102.1 63 82.5
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.4e-17 95.1 79 65.8
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.4e-17 94.4 90 55.6
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.7e-15 88.2 49 81.6
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 2.3e-15 87.8 48 87.5
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 1.6e-13 81.6 46 80.4
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 1.1e-09 68.9 76 47.4
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 1.8e-09 68.2 76 48.7
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.2e-08 65.5 43 72.1
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 1.2e-08 65.5 76 48.7
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 1.7e-07 61.6 44 61.4
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 3.0e-07 60.8 43 69.8
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 2.5e-06 57.8 28 82.1


User provided reference genes

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