Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 3.2e-50 201.4 101 100.0
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.9e-26 122.5 102 66.7
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 2.6e-20 102.1 100 56.0
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 3.8e-19 98.2 95 60.0
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 1.9e-18 95.9 97 55.7
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 5.7e-15 84.3 101 47.5
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 7.4e-15 84.0 105 50.5
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 1.7e-14 82.8 102 50.0
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 8.2e-14 80.5 105 47.6
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 2.4e-13 79.0 100 45.0
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 3.1e-13 78.6 101 47.5
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 5.3e-13 77.8 91 47.3
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 9.1e-13 77.0 98 49.0
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.0e-12 75.9 102 47.1
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 2.6e-12 75.5 95 52.6
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 2.6e-12 75.5 92 48.9
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.6e-12 75.5 97 46.4
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 3.5e-12 75.1 97 50.5
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.0e-11 73.6 92 47.8
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 1.0e-11 73.6 92 47.8
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 1.3e-11 73.2 99 46.5
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 2.2e-11 72.4 86 52.3
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 2.9e-11 72.0 75 49.3
FAN03G2059 Fragaria x ananassa HOM05D019773 ORTHO05D007271 6.5e-11 70.9 94 44.7
FAN10G2337 Fragaria x ananassa HOM05D019773 ORTHO05D007271 6.5e-11 70.9 94 44.7
FAN06G4130 Fragaria x ananassa HOM05D019773 ORTHO05D007271 1.1e-10 70.1 94 45.7
Lj5g0009165 Lotus japonicus HOM05D007861 ORTHO05D007271 1.5e-10 69.7 90 51.1
EL10Ac9g21645 Beta vulgaris HOM05D009695 ORTHO05D007271 2.5e-10 68.9 104 43.3
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 5.5e-10 67.8 76 48.7
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 2.1e-09 65.9 104 45.2
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 2.1e-09 65.9 70 55.7
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 2.7e-09 65.5 62 50.0
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 4.7e-09 64.7 62 50.0
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 4.7e-09 64.7 94 45.7
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 6.1e-09 64.3 50 60.0
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 6.1e-09 64.3 99 43.4
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 1.0e-08 63.5 101 39.6
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 1.0e-08 63.5 49 57.1
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 1.4e-08 63.2 64 53.1
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 1.8e-08 62.8 68 47.1
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 1.8e-08 62.8 101 40.6
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 2.3e-08 62.4 74 48.6
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.0e-08 62.0 93 41.9
BcaB01g00155 Brassica carinata HOM05D009695 ORTHO05D007271 4.0e-08 61.6 78 44.9
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 4.0e-08 61.6 102 41.2
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 6.7e-08 60.8 61 50.8
MBI18_g25264_MAGBIO Magnolia biondii HOM05D022601 ORTHO05D023448 8.8e-08 60.5 97 43.3
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 1.1e-07 60.1 99 42.4
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 1.1e-07 60.1 101 44.6
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 1.1e-07 60.1 78 47.4
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 1.5e-07 59.7 98 42.9
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 2.0e-07 59.3 54 55.6
CARHR164810 Cardamine hirsuta HOM05D009695 ORTHO05D007271 2.6e-07 58.9 76 42.1
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 2.6e-07 58.9 56 51.8
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 2.6e-07 58.9 72 45.8
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 3.3e-07 58.5 102 44.1
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 3.3e-07 58.5 89 40.4
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 9.7e-07 57.0 56 51.8
Carub.0005s2144 Capsella rubella HOM05D009695 ORTHO05D007271 1.7e-06 56.2 40 57.5
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 1.7e-06 56.2 101 38.6
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 2.8e-06 55.5 73 45.2
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 3.7e-06 55.1 105 36.2
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 3.7e-06 55.1 30 73.3
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 3.7e-06 55.1 101 40.6
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 4.8e-06 54.7 59 44.1
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 6.3e-06 54.3 60 50.0
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 8.2e-06 53.9 93 38.7
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 8.2e-06 53.9 39 64.1


User provided reference genes

Program Settings