Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.0e-63 244.6 122 100.0
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.7e-37 158.3 128 63.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 5.1e-34 147.9 128 65.6
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 8.1e-32 140.6 131 58.8
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.6e-30 135.6 132 58.3
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 7.6e-30 134.0 132 58.3
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 3.6e-24 115.2 75 74.7
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.9e-21 104.8 120 45.0
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.4e-20 102.4 124 47.6
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.1e-20 100.9 123 49.6
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.1e-19 99.4 124 47.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 3.5e-19 98.6 124 46.8
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 6.0e-19 97.8 124 46.0
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 7.9e-19 97.4 124 45.2
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 7.9e-19 97.4 121 43.8
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 1.7e-18 96.3 120 50.0
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 3.0e-18 95.5 105 50.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.0e-18 95.5 122 43.4
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 3.9e-18 95.1 125 48.0
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.9e-17 92.8 117 49.6
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 3.3e-17 92.0 90 52.2
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 4.3e-17 91.7 134 44.0
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 5.6e-17 91.3 103 48.5
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 7.3e-17 90.9 110 46.4
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 9.6e-17 90.5 128 41.4
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 2.1e-16 89.4 104 49.0
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.1e-16 89.4 109 44.0
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 2.1e-16 89.4 127 41.7
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.1e-16 89.4 123 47.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.6e-16 88.6 121 46.3
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.1e-15 87.0 122 41.8
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.4e-15 86.7 100 53.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.1e-15 85.5 121 43.0
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.1e-15 85.5 121 43.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 6.9e-15 84.3 122 39.3
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 6.9e-15 84.3 75 54.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 6.9e-15 84.3 104 48.1
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 9.0e-15 84.0 117 44.4
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 9.0e-15 84.0 121 42.1
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.2e-14 83.6 62 58.1
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.5e-14 83.2 105 45.7
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.5e-14 83.2 121 42.1
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.0e-14 82.8 111 41.4
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.0e-14 82.8 139 36.7
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 2.0e-14 82.8 101 45.5
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.6e-14 82.4 78 52.6
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.6e-14 82.4 106 42.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 2.6e-14 82.4 117 41.9
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 3.4e-14 82.0 79 48.1
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.4e-14 82.0 80 47.5
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 3.4e-14 82.0 80 51.2
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.4e-14 82.0 111 46.8
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.5e-14 81.6 122 37.7
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.5e-14 81.6 76 50.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 4.5e-14 81.6 126 42.1
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 4.5e-14 81.6 105 41.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 5.8e-14 81.3 136 34.6
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.6e-14 80.9 80 47.5
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 7.6e-14 80.9 125 42.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.6e-14 80.9 120 45.8
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 9.9e-14 80.5 117 41.9
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.9e-14 80.5 117 41.9
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.9e-14 80.5 117 41.9
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.9e-14 80.5 80 47.5
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 9.9e-14 80.5 100 47.0
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 9.9e-14 80.5 150 34.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-13 79.7 127 40.9
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.7e-13 79.7 102 45.1
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.7e-13 79.7 103 46.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.8e-13 78.6 135 35.6
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.8e-13 78.6 126 38.1
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.9e-13 78.2 108 44.4
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 6.4e-13 77.8 135 34.8
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 6.4e-13 77.8 81 51.9
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.4e-13 77.4 108 44.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.1e-12 77.0 111 39.6
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.1e-12 77.0 111 43.2
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.4e-12 76.6 135 39.3
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-12 76.3 108 44.4
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.9e-12 76.3 80 50.0
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.4e-12 75.9 102 43.1
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 2.4e-12 75.9 118 39.8
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 2.4e-12 75.9 118 39.8
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 7.1e-12 74.3 122 37.7
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.3e-12 73.9 94 44.7
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 9.3e-12 73.9 102 44.1
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 9.3e-12 73.9 103 45.6
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.6e-11 73.2 69 53.6
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.7e-11 72.4 67 56.7
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 3.5e-11 72.0 79 49.4
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 3.5e-11 72.0 74 43.2
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.6e-11 71.6 96 43.8
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 6.0e-11 71.2 123 39.0
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.0e-11 71.2 104 34.6
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 7.9e-11 70.9 67 52.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.0e-10 70.5 99 39.4
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.3e-10 70.1 87 46.0
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.8e-10 69.7 103 39.8
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.8e-10 69.7 121 38.8
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.3e-10 69.3 96 40.6
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.3e-10 69.3 57 54.4
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.3e-10 69.3 66 53.0
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 2.3e-10 69.3 72 47.2
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 3.9e-10 68.6 79 39.2
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 3.9e-10 68.6 84 44.0
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 5.1e-10 68.2 104 42.3
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 8.7e-10 67.4 65 50.8
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.7e-10 67.4 104 40.4
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.1e-09 67.0 70 45.7
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 2.5e-09 65.9 95 38.9
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.5e-09 65.9 83 43.4
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.5e-09 65.9 82 39.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 3.3e-09 65.5 64 50.0
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.3e-09 65.5 96 39.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.6e-09 64.7 80 38.8
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 7.4e-09 64.3 55 52.7
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.6e-09 63.9 102 35.3
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 9.6e-09 63.9 79 44.3
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.3e-08 63.5 78 44.9
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 1.6e-08 63.2 89 39.3
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.1e-08 60.8 66 48.5
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.1e-07 60.5 115 36.5
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.8e-07 59.7 97 42.3
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.8e-07 59.7 74 44.6
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 1.8e-07 59.7 61 47.5
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.4e-07 59.3 61 45.9
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.4e-07 59.3 103 36.9
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.1e-07 58.9 104 33.7
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.1e-07 58.9 60 48.3
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.1e-07 58.9 58 50.0
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.1e-07 58.9 80 42.5
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.1e-07 58.9 101 39.6
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 4.0e-07 58.5 64 46.9
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 5.3e-07 58.2 80 40.0
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 6.9e-07 57.8 78 41.0
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 6.9e-07 57.8 55 58.2
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 6.9e-07 57.8 115 33.9
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 9.0e-07 57.4 121 37.2
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 9.0e-07 57.4 59 47.5
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 9.0e-07 57.4 90 36.7
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.2e-06 57.0 77 37.7
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 1.2e-06 57.0 93 35.5
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.2e-06 57.0 61 49.2
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 2.0e-06 56.2 78 38.5
Aqoxy1G01037 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.6e-06 55.8 96 36.5
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 2.6e-06 55.8 63 42.9
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 2.6e-06 55.8 79 40.5
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 2.6e-06 55.8 75 44.0
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 3.4e-06 55.5 108 37.0
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 4.5e-06 55.1 55 56.4
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 4.5e-06 55.1 91 38.5
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 5.8e-06 54.7 55 54.5
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 5.8e-06 54.7 55 54.5
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 5.8e-06 54.7 55 56.4
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 5.8e-06 54.7 74 41.9
Thecc.01G326800 Theobroma cacao HOM05D014668 ORTHO05D016259 5.8e-06 54.7 58 48.3
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 7.6e-06 54.3 55 54.5
THA.LOC104827410 Tarenaya hassleriana HOM05D010843 ORTHO05D012975 7.6e-06 54.3 73 45.2
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.0e-05 53.9 80 41.2
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 1.0e-05 53.9 67 43.3
SEGI_13512 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 1.0e-05 53.9 58 51.7
SEGI_20981 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 1.0e-05 53.9 58 51.7


User provided reference genes

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