Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.4e-131 473.0 240 100.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 5.9e-103 377.9 240 78.8
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.6e-100 369.8 244 78.7
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.0e-83 313.9 228 68.9
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 2.6e-82 309.3 191 75.4
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.9e-80 303.1 224 67.4
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 3.2e-80 302.4 215 66.5
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 9.2e-80 300.8 227 64.3
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 9.2e-80 300.8 227 64.3
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.6e-79 298.5 216 68.5
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.0e-78 297.4 227 63.0
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.3e-78 297.0 239 60.3
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.3e-78 296.2 208 66.8
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 6.6e-78 294.7 214 65.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.5e-77 293.5 218 67.9
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 5.6e-77 291.6 211 65.9
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.6e-76 290.0 222 64.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 3.6e-76 288.9 222 63.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 3.6e-76 288.9 199 68.3
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.4e-75 287.0 226 61.1
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.8e-75 286.6 204 74.5
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.8e-75 286.6 215 64.2
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.8e-75 286.6 212 63.7
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.1e-75 285.8 220 63.2
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 4.0e-75 285.4 212 65.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 5.2e-75 285.0 226 58.0
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.2e-75 285.0 208 65.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 6.8e-75 284.6 212 64.6
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 8.9e-75 284.3 216 65.7
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.6e-74 282.7 222 60.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 3.4e-74 282.3 216 64.4
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 4.4e-74 282.0 242 57.4
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 3.7e-73 278.9 223 61.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.4e-73 278.1 228 61.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 6.4e-73 278.1 233 60.1
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 1.4e-72 276.9 229 59.8
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.9e-72 276.6 231 58.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.6e-71 273.5 207 60.4
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.7e-71 272.7 213 62.4
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 7.8e-71 271.2 217 62.2
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.0e-70 270.8 210 61.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 3.0e-70 269.2 216 59.3
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.0e-70 269.2 231 59.3
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 8.6e-70 267.7 219 59.8
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.5e-69 266.2 212 58.5
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.5e-69 266.2 218 59.2
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.3e-69 265.4 213 60.6
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 5.6e-69 265.0 213 58.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.1e-68 263.1 220 57.3
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-68 262.7 247 56.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.8e-68 262.7 231 56.7
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 3.6e-68 262.3 213 58.2
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.6e-68 262.3 218 57.8
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.7e-68 261.9 221 57.9
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.7e-68 261.9 218 56.9
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 2.3e-67 259.6 220 56.4
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.0e-67 258.8 237 52.7
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 5.2e-67 258.5 202 60.9
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.9e-67 257.7 220 57.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 3.4e-66 255.8 202 60.4
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.9e-66 254.2 209 57.4
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 1.7e-65 253.4 211 57.8
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.9e-65 252.7 183 66.7
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 6.4e-65 251.5 213 56.3
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 8.4e-65 251.1 197 64.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.1e-64 250.8 211 56.9
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.6e-63 246.9 211 56.9
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.1e-63 246.5 228 52.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.1e-63 246.5 213 55.9
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 6.0e-63 245.0 213 54.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.8e-63 244.6 214 58.4
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-61 240.4 228 50.0
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.9e-61 240.0 213 54.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-61 239.6 206 53.9
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 2.5e-61 239.6 206 53.9
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.3e-61 239.2 227 48.9
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.3e-61 239.2 209 54.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-61 239.2 209 54.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.3e-61 239.2 213 53.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 4.3e-61 238.8 229 51.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 4.3e-61 238.8 225 51.1
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 7.3e-61 238.0 206 53.9
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.2e-60 237.3 207 55.1
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.2e-60 237.3 213 55.4
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.6e-60 236.9 210 53.8
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.6e-60 236.9 213 53.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.1e-60 236.5 227 52.4
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-60 236.1 232 49.6
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.8e-60 236.1 230 51.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.8e-60 236.1 209 54.5
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 4.7e-60 235.3 210 51.9
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 4.7e-60 235.3 216 52.8
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 6.2e-60 235.0 227 49.3
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 8.1e-60 234.6 210 53.8
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 8.1e-60 234.6 210 53.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.4e-59 233.8 228 48.7
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 2.4e-59 233.0 212 51.4
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.1e-59 232.6 235 56.2
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.0e-59 232.3 231 51.1
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 4.0e-59 232.3 231 51.1
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 3.4e-58 229.2 232 50.9
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.4e-58 228.8 194 55.2
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.8e-58 228.4 229 50.2
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.3e-57 227.3 182 58.8
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.7e-57 226.9 213 54.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.9e-57 226.1 204 52.0
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 6.4e-57 224.9 216 53.7
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.4e-56 223.8 176 58.0
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 9.3e-56 221.1 204 57.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.6e-55 220.3 174 60.3
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 6.0e-55 218.4 217 50.7
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 7.8e-55 218.0 240 47.1
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.3e-54 216.5 254 44.9
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.1e-53 214.2 164 62.2
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 4.3e-53 212.2 200 49.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.1e-51 207.6 217 50.7
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.8e-50 201.8 265 49.1
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 9.9e-50 201.1 189 47.1
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.4e-48 196.4 242 44.6
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.2e-48 195.7 210 51.4
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-47 194.1 207 52.2
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.7e-47 193.0 133 65.4
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.1e-43 181.0 146 65.1
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.9e-41 172.9 225 43.1
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 1.4e-40 170.6 108 69.4
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 7.1e-40 168.3 225 40.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.2e-39 167.5 108 70.4
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.2e-39 167.5 258 39.1
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.3e-38 163.3 140 48.6
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 3.9e-38 162.5 187 39.6
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 7.6e-26 121.7 210 37.6
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 9.3e-24 114.8 80 57.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.7e-21 105.5 95 58.9
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.4e-21 105.1 108 50.9
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 3.7e-20 102.8 72 61.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 5.0e-17 92.4 61 62.3
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 5.5e-16 89.0 58 65.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 7.2e-16 88.6 95 51.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.0e-14 84.7 89 46.1
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.3e-14 83.6 129 45.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.0e-14 83.2 63 54.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.9e-14 82.8 82 56.1
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 5.1e-14 82.4 80 55.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 6.7e-14 82.0 53 60.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.2e-12 75.1 50 66.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 8.2e-12 75.1 53 64.2
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-11 74.7 64 45.3
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.8e-11 73.9 77 54.5
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 4.5e-10 69.3 51 62.7
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 1.3e-09 67.8 128 31.2
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 4.2e-08 62.8 214 25.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 5.5e-08 62.4 34 67.6
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 8.0e-07 58.5 45 53.3
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.9e-06 56.2 52 53.8


User provided reference genes

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