Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 3.6e-208 728.0 373 100.0
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 3.1e-151 538.9 360 79.7
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 7.2e-148 527.7 368 76.9
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 1.8e-135 486.5 350 75.4
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 2.9e-133 479.2 368 69.6
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 3.8e-133 478.8 370 70.5
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.7e-131 472.6 367 67.8
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 6.1e-131 471.5 372 68.3
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 8.8e-130 467.6 372 67.5
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.2e-129 467.2 367 67.3
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 9.8e-129 464.2 377 65.8
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.7e-128 463.4 335 73.4
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 2.4e-127 459.5 340 70.9
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 5.9e-126 454.9 351 68.4
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 1.1e-124 450.7 360 68.1
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 1.5e-124 450.3 355 66.5
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.9e-124 449.9 357 66.4
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 2.5e-124 449.5 359 67.4
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.2e-124 448.7 387 62.5
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 4.2e-124 448.7 367 65.1
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 3.6e-123 445.7 369 65.6
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 6.1e-123 444.9 362 67.1
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 1.0e-122 444.1 362 66.0
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 1.8e-122 443.4 344 66.6
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 3.0e-122 442.6 360 65.6
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 6.8e-122 441.4 366 65.8
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 1.2e-121 440.7 359 66.3
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 5.7e-121 438.3 355 64.8
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 7.5e-121 438.0 387 62.3
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 6.3e-120 434.9 340 67.6
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.1e-119 434.1 355 65.9
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 1.4e-119 433.7 336 69.3
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.8e-119 433.3 374 63.9
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 4.1e-119 432.2 342 66.7
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 5.4e-119 431.8 349 65.0
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.6e-118 430.3 355 64.5
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 2.0e-118 429.9 355 64.5
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 2.7e-118 429.5 369 62.9
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.3e-117 426.4 345 67.2
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 6.6e-117 424.9 359 63.0
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 8.6e-117 424.5 334 65.3
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 8.6e-117 424.5 349 64.8
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 1.1e-116 424.1 353 64.0
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.5e-116 423.7 342 66.4
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 1.5e-116 423.7 353 65.4
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 7.3e-116 421.4 354 63.0
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 9.5e-116 421.0 331 65.3
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 3.0e-114 416.0 363 62.5
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 4.4e-113 412.1 350 64.9
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 5.7e-113 411.8 334 63.2
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 2.2e-112 409.8 340 61.8
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.3e-112 407.9 335 63.6
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 1.1e-111 407.5 353 62.0
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.4e-111 407.1 331 66.5
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.8e-111 406.8 357 62.5
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.8e-111 406.8 357 61.3
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 7.0e-111 404.8 330 64.8
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 9.2e-111 404.4 335 63.0
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.6e-110 403.7 357 61.1
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 4.6e-110 402.1 359 61.8
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.3e-109 400.6 331 65.9
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 2.3e-109 399.8 330 64.2
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 2.3e-109 399.8 347 64.0
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 5.0e-109 398.7 360 60.6
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 6.6e-109 398.3 330 64.8
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 1.1e-108 397.5 346 61.8
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 1.5e-108 397.1 360 60.6
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.3e-108 396.0 330 64.2
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 5.6e-108 395.2 330 63.3
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 5.6e-108 395.2 330 63.3
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 5.6e-108 395.2 339 61.9
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 2.1e-107 393.3 356 59.8
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 6.2e-107 391.7 330 63.0
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 8.0e-107 391.3 330 63.0
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.4e-106 390.6 330 62.7
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 3.1e-106 389.4 365 57.8
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 6.8e-106 388.3 362 58.6
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 8.9e-106 387.9 356 59.6
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 1.2e-105 387.5 386 58.3
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 9.8e-105 384.4 307 64.8
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 1.3e-104 384.0 346 57.5
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 2.2e-104 383.3 333 62.2
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 1.6e-102 377.1 345 60.6
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 7.8e-102 374.8 330 59.1
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 3.0e-101 372.9 359 58.8
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 3.0e-101 372.9 359 58.8
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 6.6e-101 371.7 283 69.3
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 2.8e-99 366.3 336 58.3
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 2.8e-99 366.3 336 58.3
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 2.8e-99 366.3 336 58.3
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 3.4e-97 359.4 339 56.9
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 3.4e-97 359.4 336 56.5
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 2.2e-96 356.7 333 56.8
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.1e-95 354.4 331 57.4
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 1.6e-94 350.5 364 52.7
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 2.1e-94 350.1 301 60.8
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 2.1e-94 350.1 260 72.3
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 2.7e-94 349.7 345 56.5
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 6.0e-94 348.6 301 59.1
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.6e-91 340.5 335 54.6
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 1.4e-87 327.4 204 83.8
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 1.4e-87 327.4 204 83.8
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 1.9e-87 327.0 336 53.9
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 3.3e-84 316.2 277 59.9
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 3.3e-76 289.7 232 64.7
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 6.9e-74 282.0 346 46.8
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 2.6e-73 280.0 335 45.4
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 8.4e-72 275.0 338 43.8
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.9e-71 273.9 285 50.2
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 6.7e-61 238.8 212 60.4
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.6e-59 234.2 342 39.2
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 5.3e-58 229.2 205 61.0
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 2.0e-57 227.3 199 61.8
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 3.5e-54 216.5 279 46.2
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 3.7e-51 206.5 191 55.5
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 6.3e-51 205.7 220 51.8
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 5.3e-50 202.6 148 70.9
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 6.1e-46 189.1 141 70.9
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 6.1e-46 189.1 128 71.9
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 1.4e-45 188.0 142 69.7
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 3.0e-45 186.8 214 54.7
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 2.8e-43 180.3 181 55.2
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 4.1e-42 176.4 206 47.1
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 7.7e-41 172.2 170 54.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 6.5e-40 169.1 335 33.1
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.1e-34 151.8 161 52.8
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 5.3e-34 149.4 134 59.7
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 6.5e-32 142.5 217 39.2
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 2.5e-31 140.6 107 69.2
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 9.4e-31 138.7 121 62.8
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 2.6e-28 130.6 141 58.2
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 2.6e-28 130.6 141 58.2
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 2.0e-25 120.9 119 57.1
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 5.5e-23 112.8 109 56.9
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 5.7e-20 102.8 243 29.6
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.2e-19 100.9 114 49.1
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 7.5e-12 75.9 230 29.1
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 1.6e-09 68.2 93 51.6
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 2.0e-09 67.8 72 54.2
SEGI_22479 Sequoiadendron giganteum HOM05D005426 ORTHO05D006996 2.5e-07 60.8 249 25.3
ECA236G1049 Erigeron canadensis HOM05D002177 ORTHO05D002257 1.6e-06 58.2 379 20.8
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 2.1e-06 57.8 64 48.4
PGSC0003DMG400012809 Solanum tuberosum HOM05D002177 ORTHO05D002257 2.8e-06 57.4 383 20.6
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 8.0e-06 55.8 362 24.0


User provided reference genes

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