Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.9e-124 448.7 256 100.0
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 5.7e-96 354.8 257 83.7
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 3.7e-79 298.9 255 76.1
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 4.7e-74 282.0 265 65.7
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 4.1e-70 268.9 246 65.9
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.2e-69 267.3 245 67.3
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 2.1e-69 266.5 255 63.9
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 4.6e-69 265.4 251 62.9
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 2.3e-68 263.1 279 58.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 3.0e-68 262.7 245 61.2
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.9e-67 260.0 252 61.5
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 3.3e-67 259.2 255 63.5
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.3e-67 258.1 251 64.1
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.2e-66 257.3 245 62.4
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.6e-66 256.9 245 66.1
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 6.2e-66 255.0 251 63.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.8e-65 253.4 247 61.5
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 6.8e-65 251.5 245 61.2
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.4e-64 248.8 214 63.6
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 2.2e-63 246.5 245 63.3
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.4e-62 243.8 244 58.6
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.9e-62 243.4 205 67.3
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.4e-62 243.0 237 61.2
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 9.2e-62 241.1 212 62.7
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.2e-61 240.7 245 60.4
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-61 240.4 255 59.6
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.6e-61 240.4 244 57.8
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 3.5e-61 239.2 235 59.6
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 7.8e-61 238.0 220 64.1
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.0e-60 237.7 245 57.1
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.3e-60 237.3 207 63.3
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.7e-60 236.9 243 56.8
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 3.9e-60 235.7 236 59.3
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.9e-60 235.7 203 65.0
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 5.1e-60 235.3 229 58.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.1e-60 235.3 255 59.2
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 6.6e-60 235.0 206 63.1
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 2.5e-59 233.0 216 61.1
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 7.3e-59 231.5 207 64.7
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 4.7e-58 228.8 245 55.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 6.2e-58 228.4 245 56.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.1e-58 228.0 208 61.1
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 8.1e-58 228.0 245 56.3
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.1e-57 227.6 245 56.3
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.8e-57 226.9 217 59.9
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.1e-57 226.1 241 56.4
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 4.0e-57 225.7 210 62.4
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 8.9e-57 224.6 246 55.3
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 3.4e-56 222.6 246 55.3
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 5.8e-56 221.9 236 57.6
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 7.6e-56 221.5 208 62.0
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 2.9e-55 219.5 235 56.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.8e-55 219.2 209 57.4
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 3.8e-55 219.2 243 59.3
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 6.4e-55 218.4 217 57.6
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 8.4e-55 218.0 243 55.1
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.9e-54 216.9 243 59.7
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 4.2e-54 215.7 221 57.5
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 3.5e-53 212.6 239 61.5
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.6e-53 212.2 200 59.0
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 4.6e-53 212.2 200 59.5
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 6.0e-53 211.8 224 60.3
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 1.0e-52 211.1 240 55.8
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.0e-52 211.1 215 57.7
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 1.9e-51 206.8 186 62.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.9e-51 206.8 226 55.3
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.5e-51 206.5 245 52.7
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.3e-51 205.7 242 55.8
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 5.6e-51 205.3 243 56.8
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.8e-49 200.3 242 57.0
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 4.0e-49 199.1 194 58.2
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 4.0e-49 199.1 194 58.2
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 4.0e-49 199.1 194 58.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 4.0e-49 199.1 245 51.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 5.3e-49 198.7 216 56.0
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 5.3e-49 198.7 216 56.0
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-48 196.4 248 53.6
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 2.6e-48 196.4 248 53.6
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.6e-48 196.4 177 62.7
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 4.4e-48 195.7 192 58.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 9.9e-48 194.5 210 52.9
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.2e-47 193.4 205 55.6
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.2e-47 193.4 203 57.6
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 2.2e-47 193.4 241 57.7
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.9e-47 193.0 259 52.5
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 4.9e-47 192.2 252 48.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.4e-46 190.7 216 55.6
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 1.9e-46 190.3 230 52.2
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 5.4e-46 188.7 204 56.4
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 7.1e-46 188.3 216 54.2
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.1e-45 186.8 199 55.3
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.7e-45 186.4 244 54.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 4.6e-45 185.7 241 57.3
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 7.8e-45 184.9 208 54.3
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.3e-44 184.1 240 48.8
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.7e-44 183.7 241 51.9
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 2.3e-44 183.3 241 51.9
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.9e-44 182.6 241 51.5
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 5.1e-44 182.2 240 53.3
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.3e-43 179.5 208 52.9
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 4.3e-43 179.1 233 54.1
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 5.6e-43 178.7 205 54.6
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 7.3e-43 178.3 241 53.5
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.6e-42 177.2 178 58.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.1e-42 176.8 203 51.2
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.1e-41 174.5 213 51.6
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.2e-40 171.0 182 55.5
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 2.0e-40 170.2 240 52.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.6e-40 169.9 206 51.5
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 2.6e-40 169.9 157 63.7
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 4.5e-40 169.1 149 65.8
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 4.9e-39 165.6 243 47.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.9e-38 163.7 187 54.0
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 4.2e-38 162.5 213 49.8
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 5.4e-38 162.2 120 70.8
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 7.1e-38 161.8 225 46.7
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-37 161.0 170 57.6
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 1.2e-37 161.0 211 47.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 3.5e-37 159.5 207 49.3
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 6.0e-37 158.7 181 55.8
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 3.9e-36 156.0 159 57.2
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 6.7e-36 155.2 164 57.3
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.5e-35 154.1 228 52.2
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 2.1e-34 150.2 203 47.3
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 9.0e-33 144.8 147 55.8
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 4.5e-32 142.5 129 62.0
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 8.4e-31 138.3 170 51.2
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.3e-28 131.0 241 44.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.8e-28 130.6 213 43.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 2.5e-27 126.7 131 58.8
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 1.4e-25 120.9 122 60.7
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.3e-20 104.4 114 54.4
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 2.5e-19 100.1 147 46.3
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 5.7e-19 99.0 115 53.0
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.2e-18 97.1 91 60.4
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 6.9e-17 92.0 205 34.6
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.5e-16 89.4 99 51.5
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 5.9e-16 89.0 190 34.7
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.9e-15 86.7 199 34.2
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.5e-14 83.6 101 49.5
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.7e-13 80.1 99 49.5
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 8.2e-10 68.6 62 61.3
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 2.4e-09 67.0 83 51.8
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 1.2e-08 64.7 75 50.7
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 5.9e-08 62.4 214 29.9
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 1.0e-07 61.6 208 26.4
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 5.0e-07 59.3 150 30.7
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.9e-06 57.4 119 35.3
Sed0017061 Sechium edule HOM05D002282 ORTHO05D002403 5.5e-06 55.8 125 34.4


User provided reference genes

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