Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.0e-231 805.4 419 100.0
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 7.1e-136 488.0 406 65.8
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 4.2e-128 462.2 439 59.5
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 7.9e-103 378.3 393 56.2
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.3e-99 365.5 393 54.2
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.3e-99 365.5 393 54.2
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.7e-97 360.5 377 54.4
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.1e-93 347.8 376 52.1
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.0e-93 347.1 378 52.6
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 7.4e-93 345.1 378 52.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.1e-91 339.3 376 52.4
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.4e-90 336.3 366 54.1
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.7e-89 334.0 388 50.5
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.7e-89 334.0 405 49.6
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.2e-89 333.6 388 50.5
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.2e-89 333.6 366 53.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 7.2e-88 328.6 381 51.2
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 9.4e-88 328.2 387 50.6
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.4e-86 324.3 366 52.7
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.4e-86 324.3 405 48.1
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 2.3e-86 323.6 380 49.2
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 3.1e-83 313.2 414 48.6
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 9.1e-83 311.6 376 50.5
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.0e-82 310.5 391 49.1
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 4.2e-80 302.8 389 47.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 2.3e-78 297.0 377 47.5
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 4.0e-78 296.2 340 53.2
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 5.2e-78 295.8 377 46.9
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 6.7e-78 295.4 377 46.4
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.2e-77 294.7 470 42.8
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 4.4e-77 292.7 377 46.7
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 3.7e-76 289.7 408 46.8
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 1.4e-75 287.7 386 47.2
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.8e-75 287.3 379 48.3
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 1.2e-74 284.6 383 46.5
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.6e-74 284.3 412 45.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.6e-74 284.3 375 45.1
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 2.0e-74 283.9 381 49.3
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 4.5e-74 282.7 385 46.2
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 5.9e-74 282.3 375 46.7
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 5.9e-74 282.3 381 47.0
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 3.8e-73 279.6 390 46.4
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 3.2e-72 276.6 389 45.5
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 9.4e-72 275.0 335 49.3
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 9.4e-72 275.0 380 47.1
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.7e-71 273.5 400 43.2
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 4.7e-71 272.7 380 44.2
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.0e-69 267.3 406 42.1
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 2.6e-69 266.9 358 49.2
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 9.8e-69 265.0 426 40.8
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 9.8e-69 265.0 379 44.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 2.2e-68 263.8 401 44.1
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 4.1e-67 259.6 385 43.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 5.4e-67 259.2 348 48.3
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.5e-66 256.5 403 44.4
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 4.5e-66 256.1 394 45.2
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.7e-66 255.4 395 45.1
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 7.7e-66 255.4 395 45.1
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 5.0e-65 252.7 396 43.7
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 8.6e-65 251.9 403 42.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.5e-64 250.4 377 44.0
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.6e-63 247.7 397 43.6
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 4.7e-63 246.1 386 42.5
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.7e-63 246.1 295 49.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 8.0e-63 245.4 384 41.1
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.4e-62 244.6 297 49.8
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.0e-62 243.4 295 49.5
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 5.2e-62 242.7 377 43.5
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.2e-61 241.5 413 41.9
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.2e-61 241.5 373 42.1
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 5.7e-61 239.2 414 41.3
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.7e-60 237.7 295 48.8
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 3.1e-59 233.4 382 41.4
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.6e-58 231.1 383 42.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 2.0e-58 230.7 394 39.3
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 7.8e-58 228.8 386 37.8
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 7.8e-58 228.8 401 40.4
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 2.3e-57 227.3 416 37.7
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-55 221.1 350 45.4
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 1.0e-54 218.4 388 38.7
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 4.0e-54 216.5 350 45.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 5.2e-54 216.1 397 39.5
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 5.8e-53 212.6 354 43.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.3e-52 211.5 344 42.7
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 8.3e-52 208.8 400 37.0
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.9e-51 207.6 398 38.2
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.7e-50 203.8 305 44.6
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.7e-49 201.1 393 41.2
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 1.1e-48 198.4 154 67.5
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 7.3e-48 195.7 404 34.7
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 9.5e-48 195.3 379 39.1
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.1e-46 191.8 416 36.3
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.4e-46 191.4 373 39.7
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 8.9e-46 188.7 344 37.5
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.5e-45 188.0 393 36.4
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 3.4e-45 186.8 335 37.3
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 7.5e-45 185.7 417 33.1
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 1.3e-44 184.9 398 38.9
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 8.3e-44 182.2 138 70.3
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.4e-43 181.4 237 47.3
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 7.0e-43 179.1 237 47.3
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.6e-42 177.9 401 35.9
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.1e-42 177.6 418 34.4
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 3.9e-41 173.3 313 41.2
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 7.3e-40 169.1 316 40.2
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 6.2e-39 166.0 380 36.1
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.1e-38 165.2 229 46.7
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.8e-38 164.5 407 31.7
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.0e-37 161.0 321 37.1
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.4e-37 159.8 379 32.7
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 4.4e-37 159.8 418 32.1
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 4.4e-37 159.8 328 36.9
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 4.4e-37 159.8 340 36.8
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 5.8e-37 159.5 386 35.2
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 7.5e-37 159.1 381 34.4
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.4e-35 154.1 406 32.5
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 7.8e-34 149.1 326 36.8
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 2.3e-33 147.5 357 36.1
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.9e-32 144.4 117 65.8
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 1.2e-31 141.7 341 34.6
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.2e-28 131.0 359 31.5
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 2.9e-28 130.6 276 35.9
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.1e-26 124.4 376 31.6
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.6e-23 113.6 113 54.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 1.3e-20 105.1 145 45.5
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 7.1e-19 99.4 138 46.4
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.1e-18 97.8 161 41.6
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 3.0e-17 94.0 212 33.5
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 5.6e-16 89.7 195 35.9
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 8.4e-12 75.9 320 25.9
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 1.5e-08 65.1 53 62.3
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.8e-07 60.8 325 27.4


User provided reference genes

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