Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G145300 Carya illinoinensis HOM05D008208 ORTHO05D010143 0.0e+00 1258.0 701 100.0
QL05p019674 Quercus lobata HOM05D008208 ORTHO05D010143 4.5e-159 565.8 761 48.4
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 3.9e-70 270.4 849 33.1
Prupe.3G057400 Prunus persica HOM05D008208 ORTHO05D010143 2.5e-69 267.7 877 33.8
MD17G1181700 Malus domestica HOM05D008208 ORTHO05D010143 1.7e-65 255.0 789 33.3
Manes.11G032600 Manihot esculenta HOM05D008208 ORTHO05D010143 4.9e-65 253.4 759 34.9
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 4.6e-63 246.9 740 33.8
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 5.1e-62 243.4 800 31.1
CSS0033280 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 5.6e-61 240.0 740 33.4
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 3.4e-58 230.7 920 30.4
GSVIVG01016967001 Vitis vinifera HOM05D000585 ORTHO05D001841 4.5e-58 230.3 787 33.5
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 4.9e-57 226.9 801 30.7
Actinidia09010 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.9e-56 224.9 744 33.3
Actinidia39131 Actinidia chinensis HOM05D008208 ORTHO05D010143 1.6e-55 221.9 793 32.5
Ciclev10025127m.g Citrus clementina HOM05D008208 ORTHO05D010143 2.5e-53 214.5 737 30.7
RcHm_v2.0_Chr2g0140811 Rosa chinensis HOM05D008208 ORTHO05D010143 6.2e-52 209.9 497 35.2
TAR624G0194 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.6e-47 195.3 742 28.7
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 7.2e-40 169.9 840 28.3
vmacro17009 Vaccinium macrocarpon HOM05D008208 ORTHO05D010143 9.3e-40 169.5 729 28.9
TWI18G0382 Tripterygium wilfordii HOM05D008208 ORTHO05D010143 2.7e-39 167.9 886 26.4
Thecc.06G101100 Theobroma cacao HOM05D008208 ORTHO05D010143 6.7e-38 163.3 841 26.9
Lj9A514T51 Lonicera japonica HOM05D008208 ORTHO05D010143 2.2e-36 158.3 750 28.4
Oeu002526.1 Olea europaea HOM05D008208 ORTHO05D010143 1.4e-35 155.6 756 28.7
Dinv30428 Davidia involucrata HOM05D008208 ORTHO05D010143 4.1e-35 154.1 414 35.0
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 4.1e-35 154.1 757 29.6
Nn8g39048 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.7e-33 148.7 777 26.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 6.5e-33 146.7 221 46.2
Sabra01G0150900 Salix brachista HOM05D008208 ORTHO05D010143 9.4e-32 142.9 700 28.4
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 6.1e-31 140.2 757 30.3
Eucgr.F03082 Eucalyptus grandis HOM05D008208 ORTHO05D010143 1.1e-29 136.0 743 28.5
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 9.7e-29 132.9 798 28.7
COL.COLO4_30526 Corchorus olitorius HOM05D008208 ORTHO05D010143 2.8e-28 131.3 721 27.5
RcHm_v2.0_Chr2g0140801 Rosa chinensis HOM05D008208 ORTHO05D010143 3.1e-27 127.9 193 45.1
Sopen03g039910 Solanum pennellii HOM05D008208 ORTHO05D010143 2.6e-26 124.8 765 27.5
CANSAT56G0900 Cannabis sativa HOM05D008208 ORTHO05D010143 7.7e-26 123.2 735 30.9
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 7.7e-26 123.2 756 27.6
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 1.3e-25 122.5 778 28.3
PGSC0003DMG400002607 Solanum tuberosum HOM05D008208 ORTHO05D010143 1.3e-25 122.5 710 27.2
Nn6g35343 Nelumbo nucifera HOM05D008208 ORTHO05D010143 1.7e-25 122.1 895 23.8
Solyc03g121080.3 Solanum lycopersicum HOM05D008208 ORTHO05D010143 2.9e-25 121.3 729 26.9
Lj5A52T19 Lonicera japonica HOM05D008208 ORTHO05D010143 2.1e-23 115.2 755 26.8
Nitab4.5_0006022g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 6.1e-23 113.6 753 27.0
Cc04_g02470 Coffea canephora HOM05D008208 ORTHO05D010143 7.9e-23 113.2 883 25.1
Potri.001G190601 Populus trichocarpa HOM05D008208 ORTHO05D010143 1.4e-22 112.5 638 26.8
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 6.7e-22 110.2 756 27.9
Nitab4.5_0004969g0030 Nicotiana tabacum HOM05D008208 ORTHO05D010143 8.8e-22 109.8 781 26.5
ClCG07G013360 Citrullus lanatus HOM05D026900 ORTHO05D010143 9.7e-21 106.3 755 26.8
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 6.3e-20 103.6 767 24.3
MELO3C013005.2 Cucumis melo HOM05D026900 ORTHO05D010143 1.4e-19 102.4 645 27.8
Oeu024259.1 Olea europaea HOM05D008208 ORTHO05D010143 7.0e-19 100.1 219 37.4
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 6.1e-15 87.0 784 26.0
DCAR_023083 Daucus carota HOM05D008208 ORTHO05D010143 8.8e-14 83.2 156 40.4
Sed0025504 Sechium edule HOM05D026900 ORTHO05D010143 1.1e-13 82.8 826 24.0
PGR102G1678 Punica granatum HOM05D008208 ORTHO05D010143 2.2e-12 78.6 729 27.0
Atru.chr1.3545 Acer truncatum HOM05D008208 ORTHO05D010143 3.7e-12 77.8 222 34.7
MSTRG.11020 Avicennia marina HOM05D008208 ORTHO05D010143 3.1e-11 74.7 755 25.2
CsaV3_3G023500 Cucumis sativus L. HOM05D026900 ORTHO05D010143 4.1e-11 74.3 738 25.2
SGA_v2.0_scaffold265G46060 Striga asiatica HOM05D008208 ORTHO05D010143 5.9e-10 70.5 825 24.1
EL10Ac9g21199 Beta vulgaris HOM05D008208 ORTHO05D010143 7.7e-10 70.1 137 35.8
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 1.0e-09 69.7 773 25.0
ECA232G2142 Erigeron canadensis HOM05D008208 ORTHO05D010143 2.9e-09 68.2 140 37.1
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 5.0e-09 67.4 149 34.9
Sc10g0007610 Simmondsia chinensis HOM05D008208 ORTHO05D010143 1.5e-08 65.9 179 34.1
SalBow2G3317 Salvia bowleyana HOM05D008208 ORTHO05D010143 1.9e-08 65.5 205 31.2
Migut.I00959 Erythranthe guttata HOM05D008208 ORTHO05D010143 2.5e-08 65.1 139 37.4
CDE05G0720 Ceratophyllum demersum HOM05D008208 ORTHO05D010143 4.2e-08 64.3 48 58.3
CDE04G2701 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 7.2e-08 63.5 112 38.4
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 1.6e-07 62.4 750 25.7
HanXRQChr09g0275691 Helianthus annuus HOM05D008208 ORTHO05D010143 2.7e-07 61.6 194 29.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 3.6e-07 61.2 211 32.2
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 6.1e-07 60.5 200 30.0
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 8.0e-07 60.1 111 34.2
CDE02G2770 Ceratophyllum demersum HOM05D046919 ORTHO05D043903 1.4e-06 59.3 122 36.9
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 1.4e-06 59.3 176 32.4
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.3e-06 58.5 220 31.4
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 5.2e-06 57.4 237 29.1
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.2e-06 57.4 232 28.0
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 6.8e-06 57.0 79 44.3
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 8.8e-06 56.6 185 32.4


User provided reference genes

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