Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1608.2 779 100.0
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1429.1 779 88.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1411.7 778 87.8
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1409.4 781 87.8
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1406.0 778 87.5
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 0.0e+00 1285.0 813 78.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1265.0 784 78.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1256.9 783 77.7
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1249.2 784 77.6
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1247.6 779 77.5
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1235.7 784 76.7
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1235.7 784 76.7
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1234.6 784 76.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1232.6 784 76.5
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1226.1 775 77.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1224.5 784 75.8
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1183.7 779 73.6
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1180.6 796 73.0
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1178.7 767 75.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1176.0 784 73.2
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1176.0 784 73.2
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1166.0 784 73.1
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1160.6 784 72.8
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1159.1 768 73.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1156.4 774 73.4
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 0.0e+00 1154.0 774 73.3
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1146.7 773 71.4
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1146.3 788 71.6
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1134.8 790 70.8
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1131.3 783 70.5
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1130.9 783 70.8
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 0.0e+00 1129.0 786 71.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 780 69.9
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 771 71.1
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 0.0e+00 1127.9 758 72.7
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1123.6 790 70.1
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 0.0e+00 1123.2 800 69.9
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 0.0e+00 1122.1 769 70.7
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1120.9 775 70.8
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1119.8 780 69.5
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 0.0e+00 1115.5 770 70.6
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1115.1 770 70.0
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1114.8 782 70.2
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1113.6 772 70.3
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 0.0e+00 1110.9 771 70.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 770 70.4
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1104.0 772 69.7
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 0.0e+00 1102.4 770 69.9
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 0.0e+00 1100.1 770 69.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1099.7 779 69.4
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1099.3 780 69.9
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 770 69.9
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1095.9 769 70.1
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 781 69.3
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1094.0 769 69.8
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 0.0e+00 1092.4 773 69.0
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1088.6 770 69.9
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 779 69.3
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1087.0 769 69.6
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1086.6 781 68.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1085.9 769 69.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1084.3 770 69.7
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1083.6 770 70.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1081.6 768 69.0
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 0.0e+00 1080.5 788 68.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1080.1 775 69.2
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 770 69.1
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1075.1 788 67.9
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 5.3e-312 1074.7 774 67.8
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.1e-311 1073.2 769 69.2
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.6e-311 1072.4 769 68.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 4.8e-311 1070.8 784 68.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.2e-309 1066.2 770 68.4
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.6e-309 1065.1 770 68.2
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 5.1e-305 1050.8 780 66.2
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.9e-304 1048.9 788 66.4
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 753 69.1
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.6e-303 1045.8 777 66.2
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.1e-303 1045.4 783 66.4
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 6.2e-303 1043.9 783 66.3
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 8.1e-303 1043.5 772 67.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.4e-302 1042.7 769 66.8
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-301 1039.6 821 63.9
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.2e-301 1039.6 768 66.7
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.0e-300 1036.6 769 66.7
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.1e-297 1024.2 771 66.8
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 3.3e-296 1021.5 755 66.5
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 7.4e-296 1020.4 767 65.2
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 772 64.8
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 5.3e-294 1014.2 772 64.5
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 776 64.6
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.5e-293 1012.7 788 64.7
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 1.3e-292 1009.6 774 65.0
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 806 63.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.2e-291 1005.0 772 63.6
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.3e-291 1003.4 772 65.4
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.2e-290 1003.0 774 64.5
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 772 65.3
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.6e-290 1001.1 773 65.1
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 7.9e-290 1000.3 766 64.8
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 2.3e-289 998.8 768 63.5
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 8.7e-289 996.9 767 65.1
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.8e-287 991.9 770 63.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 3.7e-287 991.5 769 62.8
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.4e-286 989.6 770 63.0
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.8e-286 989.2 774 65.1
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 6.9e-286 987.3 776 62.5
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.2e-285 986.5 776 63.0
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.4e-285 984.9 775 63.1
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 7.7e-285 983.8 770 64.4
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.3e-284 983.0 777 62.8
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.7e-284 982.6 740 67.3
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 1.4e-283 979.5 771 62.4
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 5.5e-283 977.6 773 63.8
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 1.8e-281 972.6 772 62.8
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 4.3e-280 968.0 777 62.5
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.3e-279 966.5 773 62.0
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 1.4e-278 963.0 775 61.8
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 3.1e-278 961.8 776 60.7
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 7.2e-275 950.7 714 66.7
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 5.1e-273 944.5 777 61.3
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 2.8e-271 938.7 787 60.2
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 2.4e-270 935.6 775 62.1
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.7e-268 929.5 773 59.9
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.1e-266 922.5 782 61.3
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 7.4e-264 914.1 769 61.0
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.2e-263 912.5 853 57.7
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 3.1e-262 908.7 784 58.8
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 5.2e-257 891.3 773 59.6
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 2.0e-256 889.4 768 58.7
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 5.7e-256 887.9 725 63.6
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.7e-253 877.5 775 57.5
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 1.5e-251 873.2 757 60.9
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.2e-248 863.6 774 58.1
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 2.6e-248 862.4 775 58.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 1.9e-235 819.7 701 61.5
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 8.9e-233 810.8 738 57.7
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.9e-220 768.8 682 57.9
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.2e-184 651.0 767 46.8
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 2.9e-183 646.4 760 45.3
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-181 639.8 398 76.4
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.7e-181 639.8 398 76.4
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 3.0e-180 636.3 781 44.4
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.5e-179 634.0 759 45.5
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.0e-175 621.3 786 43.8
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-174 617.8 806 44.5
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 6.7e-172 608.6 439 67.0
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 2.4e-161 573.5 419 67.8
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 6.1e-157 558.9 746 42.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.4e-153 547.0 399 67.7
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 2.0e-136 490.7 571 46.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 6.5e-135 485.7 270 83.0
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-132 478.4 485 53.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.0e-116 425.2 257 76.3
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.3e-114 415.6 463 46.4
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.2e-96 358.6 746 33.1
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-77 295.0 274 55.1
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 4.0e-68 263.8 763 28.3
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 4.6e-64 250.4 289 49.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 7.9e-64 249.6 190 63.7
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.5e-51 208.8 152 67.8
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.7e-45 188.7 150 64.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.5e-42 176.4 90 83.3
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.1e-36 157.9 76 89.5
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-26 125.2 143 42.7
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.4e-25 119.8 142 40.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 3.1e-12 78.2 73 49.3
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.2e-11 76.3 103 38.8
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.0e-10 73.2 55 65.5
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.8e-10 71.2 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.1e-08 65.5 39 71.8


User provided reference genes

Program Settings