Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.0e-75 284.6 139 100.0
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 2.0e-58 229.2 139 79.1
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 3.5e-55 218.4 139 75.5
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 4.0e-51 204.9 142 70.4
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 3.3e-45 185.3 139 67.6
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 3.1e-35 152.1 137 57.7
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 5.2e-35 151.4 137 56.9
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 2.2e-33 146.0 140 52.9
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 4.9e-33 144.8 146 54.8
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.1e-32 143.7 138 52.9
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.4e-32 143.3 128 53.9
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 1.4e-32 143.3 140 52.1
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 2.1e-31 139.4 139 53.2
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 1.3e-30 136.7 148 51.4
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.7e-30 136.3 141 50.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.7e-30 136.3 141 53.9
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 2.3e-30 136.0 136 51.5
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 5.1e-30 134.8 137 54.0
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 6.6e-30 134.4 141 51.1
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.5e-29 133.3 139 52.5
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 9.5e-29 130.6 140 50.7
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 6.2e-28 127.9 137 51.1
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 8.1e-28 127.5 138 47.8
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.1e-27 127.1 139 52.5
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.8e-27 126.3 128 47.7
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.8e-27 126.3 128 47.7
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 3.1e-27 125.6 142 50.0
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 3.1e-27 125.6 141 48.9
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 1.5e-26 123.2 138 44.9
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.0e-26 122.9 129 51.2
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 2.0e-26 122.9 137 52.6
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 2.6e-26 122.5 136 49.3
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 4.4e-26 121.7 137 45.3
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 4.4e-26 121.7 137 48.2
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 5.8e-26 121.3 147 44.2
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 5.8e-26 121.3 137 46.0
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-25 120.2 129 50.4
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.3e-25 120.2 106 56.6
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-25 119.8 129 49.6
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 2.2e-25 119.4 152 49.3
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.9e-25 119.0 139 49.6
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 4.9e-25 118.2 141 46.1
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 8.4e-25 117.5 147 47.6
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.1e-24 117.1 139 48.2
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 1.1e-24 117.1 137 48.2
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.2e-24 115.5 137 46.0
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 5.4e-24 114.8 132 49.2
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.1e-24 114.4 146 45.9
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.2e-23 113.6 146 45.2
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.2e-23 113.6 114 50.0
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.1e-23 112.8 140 43.6
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.0e-22 110.5 140 45.0
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.0e-22 110.5 127 44.9
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-22 110.2 116 50.9
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.3e-22 110.2 143 44.8
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.3e-22 110.2 140 45.0
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.3e-22 110.2 140 45.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.3e-22 110.2 140 45.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.3e-22 110.2 140 45.0
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.3e-22 110.2 140 45.0
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.7e-22 109.8 144 44.4
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.7e-22 109.8 150 44.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 8.6e-22 107.5 88 59.1
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 2.5e-21 105.9 139 41.7
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.3e-21 105.5 137 43.8
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.3e-21 105.5 137 43.8
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 3.3e-21 105.5 136 44.9
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.3e-21 105.5 94 58.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.8e-20 102.4 120 46.7
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.1e-19 100.5 137 46.0
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.8e-19 99.8 101 52.5
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.0e-19 98.6 84 52.4
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 6.8e-19 97.8 124 45.2
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 2.0e-18 96.3 140 40.7
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 2.6e-18 95.9 124 42.7
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 4.4e-18 95.1 134 43.3
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.7e-17 93.2 132 42.4
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 1.7e-17 93.2 147 42.2
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.2e-17 92.8 130 39.2
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 8.4e-17 90.9 111 48.6
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 1.1e-16 90.5 141 40.4
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.1e-16 90.5 116 45.7
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 4.2e-16 88.6 133 41.4
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 5.4e-16 88.2 133 39.1
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 9.3e-16 87.4 91 51.6
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.3e-16 87.4 125 42.4
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.2e-15 87.0 94 44.7
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 2.1e-15 86.3 90 50.0
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 2.1e-15 86.3 111 45.0
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.1e-15 86.3 124 42.7
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 2.7e-15 85.9 132 40.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 4.6e-15 85.1 102 42.2
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 6.0e-15 84.7 140 38.6
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 6.0e-15 84.7 140 38.6
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 7.8e-15 84.3 144 41.0
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.3e-14 83.6 132 39.4
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.3e-14 83.6 102 49.0
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.3e-14 83.6 83 48.2
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 2.3e-14 82.8 94 47.9
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 3.0e-14 82.4 57 61.4
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 3.9e-14 82.0 121 41.3
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 3.9e-14 82.0 136 37.5
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 5.1e-14 81.6 102 48.0
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 6.6e-14 81.3 92 43.5
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 6.6e-14 81.3 140 37.9
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.1e-13 80.5 119 42.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.9e-13 79.7 107 41.1
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 4.3e-13 78.6 99 47.5
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 4.3e-13 78.6 99 47.5
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 4.3e-13 78.6 99 47.5
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 5.6e-13 78.2 129 36.4
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 5.6e-13 78.2 104 40.4
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 2.1e-12 76.3 84 50.0
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 2.1e-12 76.3 104 47.1
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.1e-12 76.3 115 42.6
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.8e-12 75.9 51 66.7
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 3.6e-12 75.5 61 57.4
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 4.8e-12 75.1 87 49.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 8.1e-12 74.3 61 57.4
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 1.1e-11 73.9 78 50.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.4e-11 73.6 92 42.4
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 124 41.9
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 2.4e-11 72.8 82 43.9
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.4e-11 72.8 144 36.8
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 4.0e-11 72.0 107 45.8
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 4.0e-11 72.0 134 35.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 4.0e-11 72.0 66 51.5
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 5.3e-11 71.6 88 43.2
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 6.9e-11 71.2 135 36.3
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 9.0e-11 70.9 143 35.7
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 9.0e-11 70.9 105 38.1
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 9.0e-11 70.9 128 35.2
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.0e-10 69.7 73 49.3
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 3.4e-10 68.9 75 50.7
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 7.6e-10 67.8 108 44.4
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 7.6e-10 67.8 67 50.7
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 7.6e-10 67.8 67 50.7
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.3e-09 67.0 88 42.0
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 1.3e-09 67.0 59 52.5
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.1e-08 63.9 59 50.8
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.6e-07 60.1 66 43.9
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.7e-07 59.3 35 68.6
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 3.5e-07 58.9 31 77.4
Pp3c22_2900 Physcomitrium patens HOM05D023101 ORTHO05D005760 2.3e-06 56.2 38 57.9
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 2.3e-06 56.2 53 47.2
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 6.6e-06 54.7 89 41.6
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 6.6e-06 54.7 32 62.5


User provided reference genes

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