Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.9e-88 329.3 186 100.0
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 1.6e-63 246.5 179 77.1
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.4e-62 243.4 163 76.7
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 3.9e-62 241.9 160 79.4
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 6.7e-62 241.1 160 77.5
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 2.0e-61 239.6 162 77.8
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 4.3e-61 238.4 179 72.6
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 7.4e-61 237.7 162 77.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 9.7e-61 237.3 163 75.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 1.3e-60 236.9 160 76.2
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 1.3e-60 236.9 160 76.2
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 2.8e-60 235.7 160 77.5
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 2.8e-60 235.7 160 77.5
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 2.8e-60 235.7 162 77.8
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 8.2e-60 234.2 175 70.3
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.1e-59 233.8 160 75.6
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 1.1e-59 233.8 160 74.4
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 1.8e-59 233.0 162 73.5
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 4.1e-59 231.9 162 73.5
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 4.1e-59 231.9 155 77.4
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 5.3e-59 231.5 160 76.2
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 5.3e-59 231.5 160 74.4
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 2.0e-58 229.6 166 70.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 2.6e-58 229.2 155 78.1
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 5.9e-58 228.0 159 76.1
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 5.9e-58 228.0 165 72.1
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 5.9e-58 228.0 166 69.9
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 7.7e-58 227.6 159 74.2
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.2e-57 226.1 165 70.3
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 2.9e-57 225.7 159 76.1
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 8.5e-57 224.2 165 67.9
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.9e-56 223.0 151 76.2
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 1.9e-56 223.0 151 75.5
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 1.9e-56 223.0 165 69.7
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.5e-56 222.6 152 75.7
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.2e-56 222.2 151 75.5
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 4.2e-56 221.9 152 75.7
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 5.5e-56 221.5 160 73.1
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 5.5e-56 221.5 165 69.7
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 5.5e-56 221.5 147 78.9
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 5.5e-56 221.5 162 72.2
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 9.4e-56 220.7 162 70.4
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 1.2e-55 220.3 163 68.1
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.6e-55 219.9 165 69.1
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 1.6e-55 219.9 151 74.8
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.6e-55 219.9 189 64.0
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 3.6e-55 218.8 136 85.3
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 4.7e-55 218.4 165 68.5
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 7.9e-55 217.6 156 73.1
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 1.4e-54 216.9 164 68.9
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 1.4e-54 216.9 161 73.9
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.0e-54 215.7 163 67.5
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 5.1e-54 214.9 152 75.7
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.0e-53 213.0 151 72.2
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 2.6e-53 212.6 142 79.6
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.6e-53 212.6 147 75.5
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 3.3e-53 212.2 152 74.3
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 3.3e-53 212.2 152 74.3
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 3.3e-53 212.2 152 75.7
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 4.4e-53 211.8 152 74.3
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 5.7e-53 211.5 155 71.6
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 7.4e-53 211.1 148 75.7
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 1.3e-52 210.3 147 74.8
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.3e-52 210.3 161 70.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 1.7e-52 209.9 155 71.0
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.2e-52 209.5 145 77.9
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 6.3e-52 208.0 158 70.9
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.3e-52 208.0 152 70.4
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 1.1e-51 207.2 159 70.4
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.8e-51 206.5 158 69.0
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 2.4e-51 206.1 145 77.2
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 3.1e-51 205.7 145 75.9
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 4.1e-51 205.3 160 66.9
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 7.0e-51 204.5 134 79.1
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 9.1e-51 204.1 142 73.9
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 1.2e-50 203.8 142 76.8
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.2e-50 203.8 139 75.5
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.5e-50 203.4 153 68.6
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 2.6e-50 202.6 150 69.3
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 2.6e-50 202.6 145 73.8
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 3.5e-50 202.2 150 68.0
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 3.5e-50 202.2 156 67.3
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.0e-49 200.7 152 67.8
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 1.0e-49 200.7 140 74.3
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 1.3e-49 200.3 134 77.6
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 1.3e-49 200.3 145 73.8
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 1.3e-49 200.3 145 73.8
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 1.7e-49 199.9 133 78.2
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.7e-49 199.9 152 69.1
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 1.7e-49 199.9 149 67.1
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 2.2e-49 199.5 140 72.9
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 5.0e-49 198.4 145 73.1
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 6.5e-49 198.0 149 67.1
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 8.5e-49 197.6 129 82.2
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 8.5e-49 197.6 194 57.7
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.9e-48 196.4 150 69.3
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 7.2e-48 194.5 137 70.1
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.1e-47 193.0 124 79.8
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 1.4e-46 190.3 138 73.2
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 8.8e-46 187.6 144 68.1
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 5.7e-45 184.9 126 74.6
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 5.7e-45 184.9 174 57.5
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 7.4e-45 184.5 119 80.7
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 4.1e-43 178.7 128 75.0
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 7.0e-43 177.9 154 61.0
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 1.6e-42 176.8 128 74.2
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 2.0e-42 176.4 163 57.7
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 3.5e-42 175.6 124 78.2
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 2.2e-41 172.9 112 82.1
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 4.7e-39 165.2 104 80.8
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 3.0e-38 162.5 101 85.1
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 6.7e-38 161.4 109 78.9
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 4.4e-37 158.7 118 70.3
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 1.7e-36 156.8 120 70.0
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 3.7e-36 155.6 103 80.6
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.1e-35 152.5 101 78.2
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 2.0e-34 149.8 107 73.8
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 2.7e-34 149.4 121 62.0
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.5e-32 143.7 143 54.5
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 1.2e-31 140.6 106 66.0
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 1.4e-30 137.1 118 60.2
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 1.5e-29 133.7 123 52.0
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 2.0e-29 133.3 84 81.0
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 1.6e-26 123.6 96 72.9
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 4.5e-26 122.1 81 76.5
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 9.8e-21 104.4 150 46.7
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.8e-20 102.8 116 52.6
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 7.0e-19 98.2 139 43.9
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 2.9e-17 92.8 139 40.3
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 1.8e-14 83.6 124 38.7
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 6.8e-14 81.6 141 44.0
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.3e-12 77.4 57 66.7
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 4.1e-11 72.4 53 64.2
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 7.8e-10 68.2 48 68.8
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 7.8e-10 68.2 48 68.8
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 3.0e-09 66.2 50 66.0
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.5e-08 63.2 39 82.1
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 3.6e-07 59.3 132 33.3
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 4.0e-06 55.8 39 71.8
BolC8t51972H Brassica oleracea HOM05D005569 ORTHO05D000015 4.0e-06 55.8 31 87.1
MELO3C009197.2 Cucumis melo HOM05D000289 ORTHO05D000208 8.9e-06 54.7 131 30.5
Sed0025870 Sechium edule HOM05D000289 ORTHO05D000208 8.9e-06 54.7 131 30.5


User provided reference genes

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