Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.0e-113 412.5 223 100.0
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.5e-81 305.4 233 75.1
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 2.5e-79 299.3 232 75.0
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 4.2e-79 298.5 233 73.4
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 8.8e-77 290.8 224 71.4
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.9e-71 273.1 238 62.2
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 3.4e-68 262.3 235 62.6
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 4.4e-68 261.9 232 62.5
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 1.8e-66 256.5 235 60.0
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.0e-64 250.8 237 59.1
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.0e-64 249.2 237 58.2
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 3.0e-64 249.2 228 63.2
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 6.2e-62 241.5 237 57.8
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 8.0e-62 241.1 234 61.5
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 2.3e-61 239.6 237 57.8
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.0e-61 238.8 241 59.8
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.0e-61 238.8 227 61.2
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.0e-61 238.8 227 61.2
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 3.7e-59 232.3 223 58.3
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 4.1e-58 228.8 235 55.7
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 7.0e-58 228.0 240 59.6
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 7.0e-58 228.0 227 59.9
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.6e-57 225.3 235 53.2
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.3e-56 223.8 224 58.9
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 6.6e-56 221.5 235 52.3
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 4.3e-55 218.8 237 51.9
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 7.3e-55 218.0 223 53.8
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 8.9e-53 211.1 245 54.3
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 1.2e-52 210.7 234 51.3
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.4e-50 203.8 123 75.6
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 5.4e-50 201.8 141 70.2
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.3e-48 196.4 167 61.7
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.6e-48 194.9 153 68.6
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.5e-44 183.7 172 55.8
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 2.0e-44 183.3 204 50.0
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 3.4e-44 182.6 225 49.3
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 4.4e-44 182.2 185 63.2
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.8e-37 160.2 173 53.8
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.5e-36 157.1 209 41.1
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 1.3e-35 154.1 303 37.0
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 2.4e-34 149.8 182 53.3
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 3.5e-33 146.0 207 41.5
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.8e-33 144.8 269 39.0
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.0e-32 144.4 136 50.7
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 2.3e-32 143.3 208 42.3
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 3.9e-32 142.5 224 39.7
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 5.1e-32 142.1 207 41.1
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 4.3e-31 139.0 208 40.9
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 9.6e-31 137.9 144 56.9
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 2.1e-30 136.7 207 40.1
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 2.1e-30 136.7 207 40.1
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 3.6e-30 136.0 215 40.0
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.1e-29 134.4 142 50.7
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 6.9e-29 131.7 134 63.4
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.6e-28 129.8 147 50.3
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 6.0e-25 118.6 164 42.1
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 1.0e-24 117.9 146 47.3
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.8e-24 117.1 148 47.3
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.3e-24 116.7 106 51.9
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 3.0e-24 116.3 169 42.0
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 3.9e-24 115.9 147 45.6
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 1.1e-23 114.4 124 47.6
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 1.1e-23 114.4 88 65.9
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.5e-23 114.0 150 44.0
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.4e-23 111.7 164 40.2
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.1e-21 107.8 171 40.9
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.4e-21 107.5 135 43.7
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.4e-21 106.7 171 39.2
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.4e-21 106.7 146 43.2
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 2.4e-21 106.7 174 37.9
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 3.1e-21 106.3 181 38.1
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 4.0e-21 105.9 167 47.9
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 1.2e-20 104.4 148 41.2
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.2e-20 104.4 148 41.9
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 3.4e-20 102.8 170 41.2
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.5e-20 102.4 157 39.5
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 4.5e-20 102.4 117 46.2
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 7.6e-20 101.7 184 38.6
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 7.6e-20 101.7 148 43.2
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 7.6e-20 101.7 179 37.4
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 7.6e-20 101.7 151 40.4
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 7.6e-20 101.7 147 37.4
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 1.7e-19 100.5 148 41.9
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 1.7e-19 100.5 177 38.4
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.2e-19 100.1 181 37.0
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 3.8e-19 99.4 186 35.5
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 4.9e-19 99.0 160 35.6
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 4.9e-19 99.0 173 38.7
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 8.4e-19 98.2 171 35.7
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 8.4e-19 98.2 181 38.1
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.9e-18 97.1 215 38.6
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 2.4e-18 96.7 242 32.2
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.2e-18 95.9 181 35.9
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 5.5e-18 95.5 220 33.2
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 5.5e-18 95.5 238 39.1
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.2e-17 94.4 220 32.7
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.6e-17 94.0 148 42.6
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 4.6e-17 92.4 118 40.7
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 4.6e-17 92.4 145 43.4
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.8e-16 90.5 185 35.1
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.9e-16 89.4 148 43.9
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 3.9e-16 89.4 123 40.7
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 6.7e-16 88.6 118 39.0
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 9.6e-15 84.7 117 39.3
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.3e-14 84.3 221 32.1
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.3e-14 84.3 219 29.2
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.8e-14 82.4 205 35.6
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.8e-13 80.5 158 31.6
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 3.1e-13 79.7 227 28.6
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 3.1e-13 79.7 169 32.5
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 3.1e-13 79.7 173 29.5
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.2e-12 77.8 126 35.7
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.5e-12 77.4 207 31.9
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.5e-12 77.4 229 28.8
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 2.6e-12 76.6 180 32.8
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 7.6e-12 75.1 210 29.5
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.7e-11 73.9 179 29.6
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.2e-11 73.6 102 37.3
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 2.9e-11 73.2 180 31.7
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 4.9e-11 72.4 226 27.9
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 6.5e-11 72.0 82 45.1
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 7.1e-10 68.6 134 32.1
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 1.2e-09 67.8 121 42.1
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 2.3e-08 63.5 189 28.0
ATR0618G111 Amborella trichopoda HOM05D005772 ORTHO05D006468 6.7e-08 62.0 98 48.0
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.5e-07 60.1 65 41.5
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 4.3e-07 59.3 68 41.2
QL10p063736 Quercus lobata HOM05D001309 ORTHO05D022844 5.7e-07 58.9 33 81.8
QL10p063927 Quercus lobata HOM05D000344 ORTHO05D022844 5.7e-07 58.9 33 81.8
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 7.4e-07 58.5 122 39.3
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.3e-06 57.8 191 27.7
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 2.8e-06 56.6 89 38.2
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 3.7e-06 56.2 71 45.1
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 8.2e-06 55.1 89 41.6


User provided reference genes

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