Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 0.0e+00 1211.8 616 100.0
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 0.0e+00 1078.2 607 90.0
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 0.0e+00 1077.0 604 90.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.8e-311 1070.8 607 89.6
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.2e-309 1065.8 607 89.1
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 2.7e-293 1011.5 613 83.7
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.0e-293 1010.4 613 84.3
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 6.7e-292 1006.9 596 84.4
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 2.8e-290 1001.5 596 84.9
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 5.3e-289 997.3 601 83.7
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 6.9e-289 996.9 591 84.8
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 5.8e-288 993.8 601 84.0
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.9e-287 991.5 609 82.6
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.9e-287 991.5 608 83.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.1e-286 989.6 605 82.5
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.1e-286 989.6 600 83.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.9e-286 988.8 604 83.1
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 9.3e-286 986.5 600 82.8
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.2e-285 986.1 613 81.9
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 4.6e-285 984.2 600 82.7
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 3.9e-284 981.1 606 82.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 5.7e-283 977.2 608 81.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 9.7e-283 976.5 608 81.4
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.8e-282 974.9 603 80.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.8e-282 974.9 593 83.5
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.8e-282 974.9 600 82.0
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 2.8e-282 974.9 597 82.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.7e-282 974.5 608 81.2
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 6.3e-282 973.8 615 82.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 5.3e-281 970.7 594 83.0
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.9e-281 970.3 600 82.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.5e-280 969.1 597 81.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 7.7e-280 966.8 608 80.6
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 1.0e-279 966.5 614 81.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.5e-279 963.8 601 82.2
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.1e-278 963.0 576 83.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.4e-278 962.6 597 81.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.4e-278 962.6 600 82.0
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.9e-278 962.2 600 82.3
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.7e-277 958.4 576 83.7
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 6.1e-277 957.2 610 80.2
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 7.9e-277 956.8 577 83.4
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 2.3e-276 955.3 575 84.0
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.5e-275 951.8 593 81.8
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.3e-275 951.4 600 80.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 3.3e-275 951.4 597 80.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.7e-274 948.0 600 80.5
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.8e-274 947.6 601 80.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 4.8e-274 947.6 601 79.9
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 6.9e-273 943.7 600 80.2
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 6.9e-273 943.7 596 80.2
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 2.6e-272 941.8 571 82.1
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.5e-272 941.0 597 80.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-271 938.3 599 80.3
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.9e-270 935.6 596 79.5
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.5e-270 935.3 609 79.0
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.2e-270 934.5 588 81.0
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.2e-269 932.9 588 81.0
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.6e-269 932.6 597 79.9
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 3.6e-269 931.4 601 78.5
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.8e-268 929.1 617 78.8
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 7.4e-267 923.7 583 80.3
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.4e-267 923.7 571 81.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 9.7e-267 923.3 618 78.0
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.3e-266 922.9 591 80.5
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.4e-265 919.5 612 78.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 7.0e-265 917.1 591 79.7
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-263 913.3 612 77.8
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.3e-263 912.9 578 80.8
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 1.7e-263 912.5 601 77.9
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 2.5e-262 908.7 601 76.7
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.7e-261 904.4 601 76.5
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 3.3e-259 898.3 571 79.0
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 9.7e-259 896.7 612 75.3
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.8e-258 895.2 588 77.4
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 6.3e-258 894.0 560 81.1
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.0e-255 886.7 558 81.7
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.1e-254 883.2 586 77.5
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.0e-252 874.8 591 74.6
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 4.0e-252 874.8 604 75.3
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.2e-251 873.2 594 74.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.5e-251 872.8 671 68.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-250 869.4 601 75.9
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 8.3e-250 867.1 580 75.7
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.4e-249 866.3 598 75.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 2.4e-249 865.5 570 77.4
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.2e-247 859.0 615 73.3
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 3.2e-246 855.1 570 76.8
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.2e-246 854.7 619 71.7
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 5.5e-246 854.4 601 74.0
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 3.6e-245 851.7 592 73.5
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 2.0e-243 845.9 570 76.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.6e-243 845.5 600 74.0
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 9.8e-243 843.6 571 75.5
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.1e-241 840.1 604 73.2
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.4e-241 839.0 555 76.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.4e-241 839.0 555 76.8
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.1e-241 838.6 573 75.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.1e-241 838.6 592 73.8
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-241 837.8 602 73.1
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 7.0e-241 837.4 573 75.4
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.5e-240 835.1 594 73.9
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 6.6e-239 830.9 571 75.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 4.3e-238 828.2 587 72.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 9.5e-238 827.0 565 75.2
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 9.5e-238 827.0 565 75.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.2e-237 826.6 602 73.1
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.6e-237 825.1 579 74.4
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 6.1e-237 824.3 616 70.9
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 2.0e-235 819.3 614 71.0
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.3e-234 816.6 585 71.1
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.7e-234 816.2 578 73.9
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.7e-234 816.2 613 70.1
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 2.3e-231 805.8 617 70.3
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.6e-230 801.2 594 72.2
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 7.3e-230 800.8 611 70.7
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 7.3e-230 800.8 611 70.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.6e-229 799.7 556 75.7
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.8e-229 798.9 611 70.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.0e-223 778.9 603 69.5
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.9e-222 776.2 538 72.9
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.9e-222 776.2 524 76.5
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.1e-220 768.8 574 69.2
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 9.8e-219 763.8 590 66.9
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.1e-217 760.4 555 70.5
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.1e-216 756.1 523 73.4
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-215 753.4 584 67.5
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.0e-215 752.3 610 69.3
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.0e-215 752.3 605 65.0
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.1e-215 751.5 518 74.5
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.6e-214 748.0 613 65.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 7.1e-209 731.1 408 88.0
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.1e-208 729.6 418 86.6
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.7e-205 718.4 421 84.1
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.2e-204 714.9 554 68.1
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.2e-204 714.9 562 65.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 7.6e-203 711.1 410 87.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.2e-202 709.5 606 63.5
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.1e-201 704.5 598 63.2
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-200 703.7 537 67.2
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.6e-192 675.2 538 65.4
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 6.0e-192 674.9 511 68.7
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.7e-191 673.3 495 69.1
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 5.3e-188 661.8 527 64.3
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 1.5e-182 643.7 461 74.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.0e-167 594.3 574 54.4
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.2e-160 570.9 476 60.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.0e-159 567.8 380 75.3
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 7.4e-158 561.6 524 60.1
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.7e-152 543.1 339 81.1
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.7e-144 516.5 340 78.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.0e-135 486.5 464 57.8
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.0e-107 394.0 239 80.8
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.7e-75 287.3 157 89.8
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.8e-66 258.1 145 89.7
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.6e-51 206.8 164 63.4
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 2.2e-48 198.0 164 59.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 5.3e-47 193.4 164 59.8
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 3.4e-46 190.7 164 59.1
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.4e-39 168.7 123 68.3
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.1e-39 167.5 98 85.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 1.2e-27 129.0 94 69.1
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-24 119.0 88 68.2
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 9.1e-23 112.8 115 54.8
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.5e-20 104.8 313 29.1
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.7e-19 101.3 493 23.9
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 3.6e-19 100.9 60 83.3
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 5.2e-18 97.1 126 39.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 1.3e-16 92.4 86 57.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.3e-16 90.1 111 50.5
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.4e-15 87.0 190 30.0
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 1.6e-14 85.5 70 71.4
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.6e-13 79.7 194 32.5
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.8e-11 74.7 74 60.8
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.4e-07 60.5 74 47.3
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 7.0e-07 60.1 55 50.9


User provided reference genes

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