Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 0.0e+00 1295.4 669 100.0
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 3.4e-241 838.6 678 68.4
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 1.8e-237 826.2 678 67.7
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 2.9e-224 782.3 690 65.8
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 5.5e-223 778.1 689 65.5
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 5.3e-194 681.8 677 60.6
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 3.8e-139 499.6 691 47.6
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 4.9e-131 472.6 698 48.4
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.1e-130 471.5 704 45.2
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-128 463.8 688 46.4
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 5.1e-128 462.6 667 47.1
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.1e-125 454.9 689 45.4
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.1e-125 454.9 689 45.4
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.8e-125 454.1 703 45.7
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 8.4e-123 445.3 675 46.4
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 1.4e-122 444.5 694 44.1
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.6e-121 441.0 654 45.6
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 1.6e-121 441.0 684 46.8
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 3.5e-121 439.9 660 47.0
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 3.9e-120 436.4 686 45.3
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 2.5e-119 433.7 693 46.5
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 2.6e-116 423.7 378 67.2
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 6.5e-115 419.1 707 44.3
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 3.5e-113 413.3 691 43.4
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 1.6e-110 404.4 731 43.2
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 4.1e-109 399.8 677 43.1
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 4.1e-109 399.8 688 42.2
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 4.2e-106 389.8 690 40.3
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 2.7e-105 387.1 650 41.2
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 1.5e-103 381.3 651 43.9
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 4.3e-103 379.8 685 39.6
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.0e-99 368.6 578 43.4
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 1.0e-99 368.6 655 41.1
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 1.9e-98 364.4 709 40.1
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 2.5e-98 364.0 671 41.9
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 2.7e-97 360.5 664 41.0
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 1.8e-96 357.8 662 40.9
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.1e-95 355.1 702 39.0
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 2.6e-95 354.0 688 41.1
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 5.7e-95 352.8 692 39.0
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 6.9e-93 345.9 703 40.5
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 1.3e-91 341.7 678 40.0
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 6.5e-91 339.3 670 39.6
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 1.4e-88 331.6 701 38.9
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.1e-87 328.6 695 40.1
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 2.2e-86 324.3 657 40.0
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 4.8e-86 323.2 696 38.2
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 6.3e-86 322.8 644 39.6
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 9.1e-85 318.9 568 42.3
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 2.0e-84 317.8 574 39.7
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.0e-83 315.5 685 36.9
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.7e-83 314.7 686 38.2
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 6.7e-80 302.8 461 45.3
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 1.2e-79 302.0 663 35.9
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 2.7e-76 290.8 695 36.1
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 7.2e-74 282.7 668 34.7
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.1e-73 281.2 702 34.2
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 3.6e-73 280.4 723 34.3
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 1.8e-72 278.1 635 36.2
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 3.0e-72 277.3 678 36.1
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 3.0e-72 277.3 672 36.6
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 7.5e-71 272.7 685 35.6
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 9.8e-71 272.3 710 35.4
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 3.7e-70 270.4 495 40.4
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 3.7e-70 270.4 669 36.3
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.4e-69 267.7 670 35.7
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 2.0e-68 264.6 610 36.2
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.9e-67 260.8 685 35.5
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 5.0e-67 260.0 462 38.1
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.4e-64 251.9 714 35.3
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.8e-64 251.5 666 35.0
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 3.4e-63 247.3 699 34.8
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 3.4e-63 247.3 455 40.2
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 1.1e-61 242.3 666 34.7
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 4.5e-60 236.9 604 35.4
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 7.8e-60 236.1 506 36.8
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 1.1e-58 232.3 686 31.5
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 2.1e-57 228.0 717 33.1
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 4.4e-55 220.3 699 32.3
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 1.7e-54 218.4 475 36.6
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 2.2e-54 218.0 704 32.2
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 5.4e-53 213.4 666 32.4
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 1.5e-50 205.3 651 31.8
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.4e-48 198.7 462 35.3
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 2.3e-48 198.0 597 33.5
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 4.4e-47 193.7 698 32.4
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 1.1e-45 189.1 676 31.7
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 1.0e-43 182.6 872 29.6
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 6.2e-41 173.3 260 41.9
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 4.9e-38 163.7 524 33.0
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 8.3e-38 162.9 525 33.1
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 1.9e-37 161.8 524 33.4
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 2.1e-36 158.3 447 33.8
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 1.4e-32 145.6 711 28.4
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.1e-29 136.0 453 30.2
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 1.4e-29 135.6 673 27.9
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 4.2e-29 134.0 674 29.1
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 1.0e-27 129.4 674 27.0
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 3.9e-27 127.5 453 31.1
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 2.2e-22 111.7 448 29.5
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 2.7e-20 104.8 528 28.2
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 2.3e-19 101.7 474 25.9
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 9.0e-16 89.7 487 26.5
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 2.4e-13 81.6 294 29.3
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 4.6e-12 77.4 383 27.7
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 4.3e-10 70.9 377 28.6
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 2.4e-08 65.1 318 29.2


User provided reference genes

Program Settings