Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G124900 Carya illinoinensis HOM05D006746 ORTHO05D007812 4.3e-217 757.7 379 100.0
QL10p064381 Quercus lobata HOM05D006746 ORTHO05D007812 1.9e-159 566.2 368 76.9
QL10p064455 Quercus lobata HOM05D006746 ORTHO05D007812 2.3e-157 559.3 365 76.2
Cfa008516 Carpinus fangiana HOM05D006746 ORTHO05D007812 5.4e-143 511.5 302 82.8
Haze_11128 Corylus avellana HOM05D006746 ORTHO05D007812 9.0e-138 494.2 370 70.5
Prupe.7G270000 Prunus persica HOM05D006746 ORTHO05D007812 1.5e-137 493.4 377 65.5
GSVIVG01038252001 Vitis vinifera HOM05D006746 ORTHO05D007812 1.1e-135 487.3 368 66.8
RcHm_v2.0_Chr2g0084491 Rosa chinensis HOM05D006746 ORTHO05D007812 1.7e-133 479.9 366 64.8
Dinv33247 Davidia involucrata HOM05D006746 ORTHO05D007812 7.3e-132 474.6 344 66.9
TAR636G2588 Trochodendron aralioides HOM05D006746 ORTHO05D007812 2.8e-131 472.6 364 63.2
FAN28G2345 Fragaria x ananassa HOM05D006746 ORTHO05D007812 2.1e-126 456.4 365 62.5
MD15G1143000 Malus domestica HOM05D006746 ORTHO05D007812 5.6e-124 448.4 324 68.2
CANSAT54G1618 Cannabis sativa HOM05D006746 ORTHO05D007812 9.6e-124 447.6 369 61.8
Actinidia18395 Actinidia chinensis HOM05D006746 ORTHO05D007812 2.1e-123 446.4 364 61.3
Sabra17G0008400 Salix brachista HOM05D006746 ORTHO05D007812 1.2e-121 440.7 368 61.7
Nn1g09428 Nelumbo nucifera HOM05D006746 ORTHO05D007812 1.5e-121 440.3 364 59.6
Potri.017G007500 Populus trichocarpa HOM05D006746 ORTHO05D007812 1.3e-120 437.2 368 61.7
CSS0002331 Camellia sinensis var. sinensis HOM05D006746 ORTHO05D007812 5.5e-119 431.8 364 60.4
Hma1.2p1_0108F.1_g052140 Hydrangea macrophylla HOM05D006746 ORTHO05D007812 6.0e-118 428.3 364 59.1
TWI15G0215 Tripterygium wilfordii HOM05D006746 ORTHO05D007812 1.3e-117 427.2 370 58.9
PSO675G5098 Papaver somniferum HOM05D006746 ORTHO05D007812 1.1e-116 424.1 364 58.0
PSO732G0193 Papaver somniferum HOM05D006746 ORTHO05D007812 4.0e-114 415.6 364 56.9
Ciclev10019447m.g Citrus clementina HOM05D006746 ORTHO05D007812 5.3e-114 415.2 372 59.4
Solyc08g015630.3 Solanum lycopersicum HOM05D006746 ORTHO05D007812 3.4e-113 412.5 364 56.9
PGSC0003DMG400025215 Solanum tuberosum HOM05D006746 ORTHO05D007812 3.4e-113 412.5 364 56.6
Sopen08g005630 Solanum pennellii HOM05D006746 ORTHO05D007812 7.6e-113 411.4 364 56.3
Aqoxy2G01227 Aquilegia oxysepala HOM05D006746 ORTHO05D007812 1.7e-112 410.2 369 55.8
Sed0026330 Sechium edule HOM05D006746 ORTHO05D007812 4.2e-111 405.6 367 56.4
Sc13g0007590 Simmondsia chinensis HOM05D006746 ORTHO05D007812 1.3e-109 400.6 365 55.6
CsaV3_7G007200 Cucumis sativus L. HOM05D006746 ORTHO05D007812 2.3e-109 399.8 368 56.0
Duzib128G1730 Durio zibethinus HOM05D006746 ORTHO05D007812 2.3e-109 399.8 369 56.6
CAN.G607.8 Capsicum annuum HOM05D006746 ORTHO05D007812 3.0e-109 399.4 364 55.5
DCAR_024795 Daucus carota HOM05D006746 ORTHO05D007812 3.0e-109 399.4 367 55.9
Peaxi162Scf01205g00172 Petunia axillaris HOM05D006746 ORTHO05D007812 5.7e-108 395.2 364 55.8
Glyma.11G218500 Glycine max HOM05D006746 ORTHO05D007812 9.7e-108 394.4 367 55.6
Gorai.011G224600 Gossypium raimondii HOM05D006746 ORTHO05D007812 9.7e-108 394.4 369 55.8
Glyma.18G038800 Glycine max HOM05D006746 ORTHO05D007812 2.8e-107 392.9 367 55.0
Eucgr.L02782 Eucalyptus grandis HOM05D006746 ORTHO05D007812 8.2e-107 391.3 368 54.9
Gohir.D10G200400 Gossypium hirsutum HOM05D006746 ORTHO05D007812 8.2e-107 391.3 369 55.6
MELO3C018577.2 Cucumis melo HOM05D006746 ORTHO05D007812 2.4e-106 389.8 368 54.6
Gohir.A10G192500 Gossypium hirsutum HOM05D006746 ORTHO05D007812 2.4e-106 389.8 369 55.3
Manes.01G009900 Manihot esculenta HOM05D006746 ORTHO05D007812 2.4e-106 389.8 308 62.7
FAN26G2233 Fragaria x ananassa HOM05D001906 ORTHO05D007812 1.3e-104 384.0 337 58.8
FAN26G2252 Fragaria x ananassa HOM05D001906 ORTHO05D007812 1.3e-104 384.0 337 58.8
Lsat_1_v5_gn_4_139881 Lactuca sativa HOM05D006746 ORTHO05D007812 1.7e-104 383.6 364 54.1
Lj4g0012651 Lotus japonicus HOM05D006746 ORTHO05D007812 8.5e-104 381.3 366 54.6
Phvul.001G232000 Phaseolus vulgaris HOM05D006746 ORTHO05D007812 1.1e-103 380.9 366 54.9
Thecc.05G001600 Theobroma cacao HOM05D006746 ORTHO05D007812 5.5e-103 378.6 368 56.2
Eucgr.A00429 Eucalyptus grandis HOM05D006746 ORTHO05D007812 7.2e-103 378.3 442 47.1
MSTRG.364 Avicennia marina HOM05D006746 ORTHO05D007812 9.3e-103 377.9 364 53.6
Ca_08165_v3 Cicer arietinum L. HOM05D006746 ORTHO05D007812 6.1e-102 375.2 367 53.4
Lalb_Chr15g0084751 Lupinus albus HOM05D006746 ORTHO05D007812 7.9e-102 374.8 365 54.5
Psat0s3469g0080 Pisum sativum HOM05D006746 ORTHO05D007812 1.1e-100 370.9 366 53.3
SalBow3G0778 Salvia bowleyana HOM05D006746 ORTHO05D007812 1.1e-100 370.9 364 51.6
Migut.F01782 Erythranthe guttata HOM05D006746 ORTHO05D007812 3.3e-100 369.4 364 52.7
VMungo1383G0626 Vigna mungo HOM05D006746 ORTHO05D007812 5.7e-100 368.6 366 54.6
FvH4_1g00201 Fragaria vesca HOM05D006746 ORTHO05D007812 9.7e-100 367.9 264 66.7
Medtr3g067725 Medicago truncatula HOM05D006746 ORTHO05D007812 1.1e-98 364.4 367 54.0
arahy.Tifrunner.gnm1.ann1.40HSEN Arachis hypogaea HOM05D006746 ORTHO05D007812 2.6e-97 359.8 373 53.4
TPR.G15849 Trifolium pratense HOM05D006746 ORTHO05D007812 2.6e-97 359.8 366 50.8
arahy.Tifrunner.gnm1.ann1.33LTA3 Arachis hypogaea HOM05D006746 ORTHO05D007812 7.7e-97 358.2 373 53.1
Hund22598 Selenicereus undatus HOM05D006746 ORTHO05D007812 5.0e-96 355.5 369 51.8
Nitab4.5_0002395g0070 Nicotiana tabacum HOM05D006746 ORTHO05D007812 1.9e-95 353.6 366 50.8
arahy.Tifrunner.gnm1.ann1.LQ4NH4 Arachis hypogaea HOM05D006746 ORTHO05D007812 2.5e-95 353.2 373 53.4
HanXRQChr15g0495931 Helianthus annuus HOM05D006746 ORTHO05D007812 2.5e-95 353.2 364 53.6
ATR0743G246 Amborella trichopoda HOM05D006746 ORTHO05D007812 1.6e-94 350.5 367 49.0
arahy.Tifrunner.gnm1.ann1.AQI9IU Arachis hypogaea HOM05D006746 ORTHO05D007812 1.8e-93 347.1 373 52.5
Aa31LG1G25670 Aethionema arabicum HOM05D006746 ORTHO05D007812 8.8e-93 344.7 379 50.1
AUR62023707 Chenopodium quinoa HOM05D006746 ORTHO05D007812 1.1e-92 344.4 367 50.1
Sp4g26070 Schrenkiella parvula HOM05D006746 ORTHO05D007812 2.6e-92 343.2 374 50.3
AL4G42860 Arabidopsis lyrata HOM05D006746 ORTHO05D007812 3.3e-92 342.8 375 49.9
Carub.0004s2654 Capsella rubella HOM05D006746 ORTHO05D007812 4.4e-92 342.4 374 50.8
AT2G43980 Arabidopsis thaliana HOM05D006746 ORTHO05D007812 1.3e-91 340.9 374 48.7
THA.LOC104802347 Tarenaya hassleriana HOM05D006746 ORTHO05D007812 4.8e-91 339.0 374 50.3
CARHR139150 Cardamine hirsuta HOM05D006746 ORTHO05D007812 4.1e-90 335.9 375 48.8
Thhalv10001421m.g Eutrema salsugineum HOM05D006746 ORTHO05D007812 2.0e-89 333.6 375 49.3
SGA_v2.0_scaffold71G24025 Striga asiatica HOM05D006746 ORTHO05D007812 4.5e-89 332.4 407 45.2
Lju470C3G4 Lonicera japonica HOM05D006746 ORTHO05D007812 5.9e-89 332.0 407 46.7
A05p04130 Brassica napus HOM05D006746 ORTHO05D007812 1.0e-88 331.3 374 48.1
C04p04900 Brassica napus HOM05D006746 ORTHO05D007812 1.3e-88 330.9 374 47.6
AUR62002485 Chenopodium quinoa HOM05D006746 ORTHO05D007812 1.3e-88 330.9 365 48.2
Ah.13g073160 Amaranthus hybridus HOM05D006746 ORTHO05D007812 2.2e-88 330.1 401 45.9
Os09g0518700 Oryza sativa ssp. japonica HOM05D006746 ORTHO05D007812 2.9e-88 329.7 364 48.9
BcaC02g12348 Brassica carinata HOM05D006746 ORTHO05D007812 5.0e-88 328.9 374 48.1
BraA05t19399Z Brassica rapa HOM05D006746 ORTHO05D007812 3.2e-87 326.2 374 47.6
BolC4t22120H Brassica oleracea HOM05D006746 ORTHO05D007812 3.0e-85 319.7 374 47.3
COL.COLO4_28973 Corchorus olitorius HOM05D006746 ORTHO05D007812 1.4e-82 310.8 368 47.0
Rhsim09G0003500 Rhododendron simsii HOM05D006746 ORTHO05D007812 5.9e-81 305.4 200 72.0
Nitab4.5_0000013g0050 Nicotiana tabacum HOM05D006746 ORTHO05D007812 3.0e-77 293.1 379 43.8
EL10Ac3g06170 Beta vulgaris HOM05D006746 ORTHO05D007812 8.8e-77 291.6 368 44.6
Oeu007388.1 Olea europaea HOM05D006746 ORTHO05D007812 2.0e-76 290.4 195 69.2
vmacro05599 Vaccinium macrocarpon HOM05D006746 ORTHO05D007812 4.5e-73 279.3 239 57.7
HPP92_025331 Vanilla planifolia HOM05D006746 ORTHO05D007812 1.7e-72 277.3 341 45.7
Cc03_g15960 Coffea canephora HOM05D006746 ORTHO05D007812 2.9e-72 276.6 197 66.5
Zm00001eb318540 Zea mays HOM05D006746 ORTHO05D007812 1.2e-70 271.2 279 49.1
ECA232G4866 Erigeron canadensis HOM05D006746 ORTHO05D007812 1.0e-69 268.1 236 60.6
unitig_578.g16366 Utricularia gibba HOM05D006746 ORTHO05D007812 2.0e-65 253.8 234 57.3
ClCG09G016590 Citrullus lanatus HOM05D006746 ORTHO05D007812 5.9e-65 252.3 178 68.5
Cpa.g.sc26.211 Carica papaya HOM05D006746 ORTHO05D007812 2.3e-64 250.4 412 41.5
SHI01253 Sapria himalayana HOM05D006746 ORTHO05D007812 1.7e-59 234.2 239 53.6
Mapoly0002s0194 Marchantia polymorpha HOM05D006746 ORTHO05D007812 5.8e-52 209.1 370 36.5
AagrBONN_evm.TU.Sc2ySwM_362.1591 Anthoceros agrestis HOM05D006746 ORTHO05D007812 4.9e-51 206.1 365 32.9
MD00G1087100 Malus domestica HOM05D006746 ORTHO05D007812 2.7e-49 200.3 226 51.8
Pp3c10_14490 Physcomitrium patens HOM05D006746 ORTHO05D007812 1.0e-48 198.4 371 32.3
SMO228G0029 Selaginella moellendorffii HOM05D006746 ORTHO05D007812 2.3e-45 187.2 376 33.5
Lalb_Chr18g0053301 Lupinus albus HOM05D006746 ORTHO05D007812 1.6e-38 164.5 130 60.0
PGR042G1380 Punica granatum HOM05D006746 ORTHO05D007812 4.7e-38 162.9 364 33.0
QL10p064396 Quercus lobata HOM05D006746 ORTHO05D007812 3.1e-37 160.2 168 52.4
CDE02G0327 Ceratophyllum demersum HOM05D006746 ORTHO05D007812 1.9e-34 151.0 110 63.6
CBR_g3607 Chara braunii HOM05D006746 ORTHO05D007812 5.2e-29 132.9 263 32.7
Haze_05918 Corylus avellana HOM05D003322 ORTHO05D007812 3.0e-24 117.1 65 83.1
Lalb_Chr18g0053311 Lupinus albus HOM05D006746 ORTHO05D007812 1.4e-21 108.2 158 43.7
Atru.chr3.1993 Acer truncatum HOM05D006746 ORTHO05D007812 8.4e-19 99.0 60 80.0
ClCG09G016570 Citrullus lanatus HOM05D006746 ORTHO05D007812 3.5e-17 93.6 123 42.3
arahy.Tifrunner.gnm1.ann1.KRWA17 Arachis hypogaea HOM05D006746 ORTHO05D007812 6.2e-14 82.8 148 41.9
Cre03.g182100 Chlamydomonas reinhardtii HOM05D006746 ORTHO05D007812 3.4e-12 77.0 249 27.7
HanXRQChr16g0525081 Helianthus annuus HOM05D001189 ORTHO05D001027 3.0e-08 63.9 201 27.4
HPP92_025333 Vanilla planifolia HOM05D006746 ORTHO05D007812 5.1e-08 63.2 50 54.0
Os10g0103800 Oryza sativa ssp. japonica HOM05D001189 ORTHO05D001027 4.3e-07 60.1 200 25.5
SEGI_36200 Sequoiadendron giganteum HOM05D001189 ORTHO05D001027 7.4e-07 59.3 143 30.8
MSTRG.8570 Avicennia marina HOM05D001189 ORTHO05D001027 1.6e-06 58.2 193 24.9
Glyma.06G089800 Glycine max HOM05D001189 ORTHO05D001027 2.8e-06 57.4 228 24.6
Lalb_Chr08g0242821 Lupinus albus HOM05D001189 ORTHO05D001027 3.7e-06 57.0 212 24.1
Zm00001eb025670 Zea mays HOM05D001189 ORTHO05D001027 3.7e-06 57.0 191 25.7
Ciclev10001756m.g Citrus clementina HOM05D001189 ORTHO05D001027 4.8e-06 56.6 193 24.9
Glyma.04G088000 Glycine max HOM05D001189 ORTHO05D001027 4.8e-06 56.6 229 24.5
DCAR_012833 Daucus carota HOM05D001189 ORTHO05D001027 8.1e-06 55.8 191 25.7


User provided reference genes

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