Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 2.7e-183 645.2 326 100.0
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 8.2e-148 527.3 300 87.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.8e-147 526.2 332 80.4
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.9e-145 518.8 332 78.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 7.5e-133 477.6 339 72.0
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.4e-131 472.6 335 71.0
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 7.0e-131 471.1 327 71.6
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 7.0e-131 471.1 327 71.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 4.5e-130 468.4 327 71.3
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.7e-130 467.6 296 76.0
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 7.7e-130 467.6 292 77.4
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.2e-129 466.1 329 68.7
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.2e-129 466.1 327 70.6
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.8e-129 465.3 334 70.7
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 5.0e-129 464.9 327 70.3
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.1e-128 463.8 335 70.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.2e-127 460.3 322 71.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 2.7e-127 459.1 317 71.9
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.4e-126 456.8 350 67.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.8e-126 456.4 296 75.0
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.3e-126 456.1 296 74.0
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.0e-126 455.3 296 73.3
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 5.2e-126 454.9 348 67.8
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 6.8e-126 454.5 326 68.1
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 4.4e-125 451.8 296 75.7
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 4.4e-125 451.8 292 74.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 7.5e-125 451.1 334 67.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.5e-125 451.1 329 66.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.3e-124 450.3 332 68.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.1e-123 447.2 344 67.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.4e-123 446.0 332 66.3
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.4e-123 444.9 334 66.5
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.0e-123 444.5 292 72.6
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 2.0e-122 443.0 328 66.8
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 2.0e-122 443.0 329 66.0
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.0e-121 440.7 319 68.0
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.7e-121 439.9 297 73.1
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.7e-121 439.9 329 66.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.7e-121 439.9 329 66.9
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 2.9e-121 439.1 337 66.2
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-120 436.8 310 68.1
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 3.2e-120 435.6 330 66.7
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 3.2e-120 435.6 320 67.2
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.2e-120 435.3 292 70.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 9.5e-120 434.1 328 68.0
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-119 433.7 326 67.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-119 433.7 290 71.7
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.6e-119 433.3 295 71.9
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.6e-119 433.3 292 71.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.6e-119 433.3 330 66.4
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 2.1e-119 433.0 356 63.8
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 3.6e-119 432.2 331 66.5
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.7e-119 431.8 327 66.7
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.0e-118 430.6 304 68.8
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.0e-118 430.6 334 67.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.0e-118 430.6 304 71.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.3e-118 429.5 335 66.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.0e-118 429.1 326 66.0
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.0e-118 429.1 326 66.0
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 4.0e-118 428.7 332 64.5
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 6.8e-118 427.9 313 68.1
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.8e-118 427.9 304 68.8
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 1.2e-117 427.2 326 66.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-117 427.2 302 69.5
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 7.5e-117 424.5 321 65.7
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 9.8e-117 424.1 294 71.4
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.3e-116 423.7 330 66.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.7e-116 423.3 327 66.1
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-116 423.3 328 65.2
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.2e-116 422.9 311 67.8
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 4.9e-116 421.8 323 66.3
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 6.3e-116 421.4 321 66.7
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.8e-115 419.9 307 67.4
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.1e-115 419.1 352 59.9
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 9.2e-115 417.5 334 65.0
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.2e-115 417.5 328 64.9
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-114 417.2 333 64.3
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.6e-114 416.8 334 64.4
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-114 416.4 334 64.4
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.0e-114 416.4 293 70.0
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.0e-114 416.4 320 65.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.0e-114 416.4 303 67.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-114 415.6 295 69.2
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.5e-114 415.6 297 68.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.0e-113 414.1 303 67.7
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.0e-113 414.1 296 68.9
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.9e-113 412.5 287 69.0
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.1e-112 410.6 294 67.0
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.5e-112 410.2 342 63.5
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.5e-112 410.2 312 67.0
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-112 409.8 331 62.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.2e-111 407.1 296 66.9
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 8.0e-111 404.4 299 65.9
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.3e-110 402.9 327 63.9
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.4e-109 399.1 290 65.9
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 3.4e-109 399.1 290 65.9
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 9.8e-109 397.5 304 65.5
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.7e-108 396.7 290 65.5
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.9e-108 395.2 330 61.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.0e-107 391.3 330 60.9
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-106 390.6 330 61.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 3.5e-106 389.0 333 59.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.1e-104 384.0 301 63.1
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.5e-104 383.6 302 62.6
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.5e-104 383.6 298 65.1
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.5e-104 382.9 328 60.7
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 9.5e-104 380.9 293 65.5
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.2e-103 380.6 265 68.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.7e-103 378.6 300 60.7
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 3.2e-99 365.9 333 56.2
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.7e-97 360.1 329 59.0
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.7e-95 352.1 286 60.1
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 5.2e-94 348.6 272 63.6
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 5.8e-93 345.1 305 56.4
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 9.9e-93 344.4 291 60.5
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 2.1e-90 336.7 342 54.4
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 8.4e-84 314.7 303 57.1
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.4e-84 314.7 260 60.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 5.6e-80 302.0 250 64.0
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.6e-79 300.4 308 52.6
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.6e-73 278.5 196 70.9
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 1.1e-72 277.7 371 41.8
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.5e-72 276.6 287 46.3
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.2e-68 263.5 265 51.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.9e-68 263.1 300 44.0
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.1e-67 261.2 288 42.7
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.2e-66 257.7 198 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 5.1e-65 252.3 258 49.2
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.9e-64 250.4 293 43.7
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.5e-61 240.7 159 69.2
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 6.7e-57 225.3 170 63.5
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 7.1e-51 205.3 252 46.8
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 1.0e-41 174.9 279 35.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.2e-36 157.1 119 61.3
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.9e-36 156.8 84 86.9
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.2e-31 140.6 94 72.3
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.4e-30 137.1 114 63.2
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.9e-29 132.5 120 56.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.9e-27 127.5 73 80.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 4.7e-26 122.9 124 52.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 8.0e-26 122.1 118 53.4
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 6.7e-25 119.0 78 70.5
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.3e-23 114.8 68 77.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.1e-22 111.7 87 59.8
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.5e-19 101.3 174 35.1
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.5e-19 100.5 80 58.8
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.1e-18 97.4 96 47.9
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 6.1e-18 95.9 96 50.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 9.7e-16 88.6 58 74.1
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 2.8e-15 87.0 58 69.0
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.9e-12 77.0 91 51.6
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-11 75.1 74 51.4
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 2.7e-10 70.5 47 70.2
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.6e-10 70.1 82 42.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 8.0e-10 68.9 50 62.0
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.7e-07 61.2 91 33.0
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 7.0e-06 55.8 67 47.8


User provided reference genes

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