Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.6e-163 579.3 294 100.0
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 4.7e-126 454.9 297 80.5
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 5.0e-112 408.3 297 75.1
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 4.2e-111 405.2 291 76.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 1.4e-109 400.2 230 86.1
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 5.2e-109 398.3 294 74.5
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 5.2e-109 398.3 264 76.5
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 1.7e-107 393.3 294 71.1
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 1.7e-107 393.3 294 73.5
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 4.9e-107 391.7 290 72.1
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 6.3e-107 391.3 214 91.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.4e-106 390.2 295 71.2
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 9.2e-106 387.5 295 72.2
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.2e-105 387.1 271 76.4
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.2e-105 387.1 271 76.4
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 4.5e-105 385.2 295 73.9
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 4.5e-105 385.2 214 90.7
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 7.7e-105 384.4 312 68.3
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.7e-105 384.4 271 76.0
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.7e-104 383.3 263 77.6
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 8.6e-104 380.9 271 76.4
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 2.5e-103 379.4 290 69.7
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 2.5e-103 379.4 294 71.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 3.3e-103 379.0 221 86.4
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.2e-102 377.1 289 69.6
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.6e-102 376.7 289 69.6
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.8e-102 375.9 291 70.8
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 4.7e-102 375.2 290 71.0
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.3e-101 372.9 219 85.4
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 2.3e-101 372.9 238 82.8
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 2.3e-101 372.9 289 70.6
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 3.0e-101 372.5 237 82.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 3.0e-101 372.5 214 86.4
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 1.2e-100 370.5 242 79.3
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 1.2e-100 370.5 242 79.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 1.2e-100 370.5 281 72.2
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.5e-100 370.2 207 89.9
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.5e-100 370.2 293 69.6
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 4.4e-100 368.6 247 78.5
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 7.5e-100 367.9 301 69.1
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 1.3e-99 367.1 283 71.7
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.3e-99 367.1 223 83.9
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.3e-99 367.1 295 69.2
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 1.3e-99 367.1 214 86.4
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 2.2e-99 366.3 257 74.3
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 2.9e-99 365.9 266 73.7
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 4.9e-99 365.2 225 82.7
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 4.9e-99 365.2 294 69.4
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 6.4e-99 364.8 215 85.6
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 8.3e-99 364.4 283 72.4
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 1.1e-98 364.0 274 72.6
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.4e-98 363.6 245 77.6
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 4.1e-98 362.1 274 72.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 4.1e-98 362.1 274 72.3
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 5.4e-98 361.7 252 75.0
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 7.0e-98 361.3 276 72.1
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 9.2e-98 360.9 197 92.4
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 1.2e-97 360.5 224 82.6
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 2.7e-97 359.4 294 70.4
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 5.9e-97 358.2 214 84.6
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-96 357.1 223 81.2
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 3.0e-96 355.9 252 73.0
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 3.0e-96 355.9 227 81.5
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.9e-96 355.5 214 83.6
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 6.6e-96 354.8 288 69.4
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 6.6e-96 354.8 288 69.4
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 6.6e-96 354.8 296 68.6
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 8.6e-96 354.4 279 70.6
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.5e-95 353.6 294 68.0
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.9e-95 353.2 214 83.2
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.5e-95 352.8 237 77.2
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 3.3e-95 352.4 299 66.2
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 7.3e-95 351.3 290 66.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 9.5e-95 350.9 302 65.6
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 9.5e-95 350.9 297 68.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 9.5e-95 350.9 214 81.3
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 2.8e-94 349.4 224 80.8
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 3.6e-94 349.0 300 67.3
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 8.0e-94 347.8 213 84.0
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.8e-93 346.7 296 67.9
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 1.8e-93 346.7 296 68.2
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 3.1e-93 345.9 267 70.4
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 4.0e-93 345.5 293 64.5
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 4.0e-93 345.5 298 65.8
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 6.8e-93 344.7 197 89.3
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 8.9e-93 344.4 296 65.2
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.2e-92 344.0 289 67.5
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.5e-92 343.6 306 64.4
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.5e-92 343.6 216 81.9
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 2.0e-92 343.2 298 67.1
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 2.0e-92 343.2 195 88.7
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.6e-92 342.8 229 76.9
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 3.4e-92 342.4 211 82.0
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 4.4e-92 342.0 193 89.1
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 7.5e-92 341.3 286 67.1
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.3e-91 340.5 310 63.5
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.7e-91 339.0 295 67.5
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 6.4e-91 338.2 217 79.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 8.3e-91 337.8 297 64.6
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 2.4e-90 336.3 255 69.0
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.1e-90 335.5 295 65.4
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 4.1e-90 335.5 235 73.2
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 9.2e-90 334.3 308 65.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 2.0e-89 333.2 286 67.1
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 5.0e-88 328.6 344 56.1
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 1.2e-86 323.9 214 77.1
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 2.2e-83 313.2 187 82.9
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.4e-82 309.7 187 83.4
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 2.4e-82 309.7 294 62.6
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 3.2e-82 309.3 256 70.7
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.2e-82 309.3 187 80.7
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.7e-81 306.2 187 81.3
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.3e-79 298.9 254 68.5
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 2.8e-78 296.2 230 70.4
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 3.1e-77 292.7 262 64.5
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.0e-72 277.7 157 89.2
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 1.0e-72 277.7 203 72.9
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.1e-71 274.2 252 64.7
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 2.5e-71 273.1 219 67.1
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 2.7e-65 253.1 151 85.4
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.0e-64 251.1 134 95.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 5.1e-64 248.8 160 75.6
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.1e-61 241.1 192 65.6
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 3.4e-60 236.1 135 88.1
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 3.8e-59 232.6 218 59.2
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.4e-58 229.9 160 69.4
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.6e-57 227.3 201 65.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 2.7e-57 226.5 191 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.2e-44 184.5 124 74.2
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 5.1e-40 169.1 180 57.2
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 5.7e-39 165.6 90 94.4
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 8.2e-38 161.8 89 91.0
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.1e-37 159.5 184 51.1
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.9e-35 153.3 179 52.0
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.2e-33 147.9 160 50.6
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 7.4e-23 112.1 78 70.5
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 2.2e-22 110.5 86 66.3
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.4e-21 107.8 78 66.7
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 4.7e-17 92.8 140 41.4
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 4.8e-14 82.8 124 42.7
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.8e-13 80.9 80 56.2


User provided reference genes

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