Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1439.1 729 100.0
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1261.1 727 88.2
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1253.0 729 87.9
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1208.7 731 84.1
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 0.0e+00 1141.3 729 81.5
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 0.0e+00 1100.5 731 77.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 0.0e+00 1091.3 736 77.3
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1089.7 730 77.0
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1089.7 721 77.8
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1088.2 732 77.0
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1087.4 735 76.9
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1086.6 730 76.4
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1080.1 704 78.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1075.8 720 76.5
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.5e-311 1072.4 736 75.7
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 6.0e-311 1070.5 729 74.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 4.9e-310 1067.4 730 76.2
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 5.4e-309 1063.9 724 75.3
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.7e-308 1061.6 731 74.6
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.6e-308 1060.8 736 74.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.3e-307 1059.3 712 75.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.6e-305 1052.4 729 76.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-304 1049.7 728 72.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.8e-304 1048.9 732 74.5
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.0e-304 1047.7 725 74.8
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.5e-303 1045.8 756 71.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.5e-303 1045.8 704 75.4
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.4e-303 1044.6 683 79.2
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 3.4e-303 1044.6 730 74.5
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 2.9e-302 1041.6 724 73.8
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 3.8e-302 1041.2 732 74.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 4.2e-301 1037.7 732 74.0
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.5e-301 1037.3 721 74.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 7.1e-301 1036.9 731 73.7
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.2e-300 1036.2 709 75.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 6.0e-300 1033.9 731 74.3
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 6.0e-300 1033.9 732 74.0
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 7.9e-300 1033.5 731 74.3
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.3e-299 1032.7 698 75.9
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 1.8e-299 1032.3 737 73.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.0e-299 1031.6 745 73.2
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.9e-298 1028.9 725 74.1
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.5e-298 1028.5 738 73.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 8.2e-297 1023.5 699 75.3
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 8.2e-297 1023.5 731 73.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 5.3e-296 1020.8 719 73.9
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 5.3e-296 1020.8 731 72.9
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 9.0e-296 1020.0 732 72.4
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 9.0e-296 1020.0 731 73.3
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.0e-294 1016.5 710 73.7
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.2e-294 1015.4 719 71.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.5e-294 1013.8 720 72.2
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.1e-293 1013.1 731 72.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.5e-293 1010.7 725 71.7
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 808 67.0
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 711 74.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 7.9e-292 1006.9 731 72.1
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.8e-291 1005.7 735 69.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.5e-290 1001.9 699 72.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.9e-288 993.8 699 72.1
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 9.0e-288 993.4 717 71.5
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.2e-287 993.0 711 72.6
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.2e-287 993.0 719 70.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 2.6e-287 991.9 723 70.4
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 7.7e-287 990.3 731 71.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.2e-286 988.8 732 69.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.4e-285 986.1 720 71.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 7.2e-285 983.8 713 71.2
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 6.1e-284 980.7 721 71.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.3e-283 978.8 702 70.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.5e-282 976.1 720 70.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 3.7e-281 971.5 710 71.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.4e-280 969.5 726 69.1
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.4e-280 969.5 718 70.5
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.1e-280 968.4 738 68.7
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.2e-278 962.2 722 69.7
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.8e-278 961.4 739 68.2
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 5.0e-278 961.1 721 69.3
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.4e-277 959.5 654 76.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.4e-277 959.5 682 71.1
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.5e-277 958.7 743 67.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.2e-276 956.4 743 67.6
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.6e-276 956.1 704 70.3
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.7e-276 955.3 733 68.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.6e-276 954.9 743 67.6
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.3e-275 952.2 738 67.3
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 9.7e-274 946.8 735 67.8
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.8e-272 942.6 670 74.6
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 2.0e-271 939.1 723 68.7
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.5e-271 937.9 729 66.9
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.0e-270 936.8 738 67.9
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 3.8e-270 934.9 717 67.2
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.8e-270 934.9 707 69.7
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.9e-269 932.6 737 66.4
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.7e-268 928.7 725 65.9
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.8e-267 923.7 721 65.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 3.3e-266 921.8 715 66.6
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 7.4e-266 920.6 697 67.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.4e-266 920.6 712 67.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 7.4e-266 920.6 726 66.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 3.7e-265 918.3 744 66.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 2.5e-261 905.6 705 66.1
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.6e-260 901.7 709 67.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.4e-259 899.8 731 64.2
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.2e-257 892.5 673 69.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.7e-257 891.7 638 73.0
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.6e-255 886.3 705 65.8
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.6e-252 876.3 731 63.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.4e-251 873.2 698 66.9
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-248 863.2 726 64.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.4e-248 863.2 713 63.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.5e-247 858.6 718 64.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 4.5e-247 858.2 730 64.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 7.3e-237 824.3 614 71.2
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 8.9e-235 817.4 580 74.5
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.2e-232 808.9 704 60.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 4.3e-229 798.5 731 58.4
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.2e-228 797.0 617 69.2
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.6e-228 796.6 733 60.7
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 5.2e-219 765.0 649 65.3
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.2e-216 754.2 546 73.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.3e-214 750.4 714 58.3
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.8e-211 740.0 566 69.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.1e-204 716.5 560 68.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 5.8e-202 708.4 573 65.6
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 9.0e-195 684.5 707 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.4e-194 682.6 667 55.9
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.6e-191 673.7 728 52.9
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.1e-188 663.3 488 69.9
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 6.7e-174 615.1 707 48.4
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.2e-152 543.1 613 52.9
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.3e-142 510.4 343 74.6
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.2e-141 508.1 892 38.9
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.2e-127 461.5 438 59.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.7e-111 406.4 257 79.4
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.4e-108 396.0 263 77.6
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.9e-99 367.9 368 54.3
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.9e-92 344.0 322 57.8
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 4.6e-82 310.1 496 39.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.9e-64 251.5 289 49.8
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 3.3e-64 250.8 547 36.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.9e-52 211.1 149 72.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.8e-52 210.7 187 58.8
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.9e-43 181.8 323 38.4
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 5.5e-43 180.3 136 71.3
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 2.0e-40 171.8 189 52.4
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.6e-40 171.4 303 38.9
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-38 166.0 139 65.5
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 8.0e-34 149.8 125 59.2
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 8.8e-33 146.4 139 55.4
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 6.3e-31 140.2 162 49.4
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 4.5e-29 134.0 323 35.3
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.0e-22 110.2 121 52.9
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 5.0e-20 104.0 88 63.6
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 3.2e-19 101.3 85 62.4
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.3e-17 95.1 78 64.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-16 90.1 80 58.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-16 90.1 80 58.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.8e-14 85.5 57 77.2
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.7e-13 81.6 65 55.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 5.0e-12 77.4 49 77.6
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.8e-09 67.0 37 86.5
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 7.0e-06 57.0 297 26.6
Medtr4g025780 Medicago truncatula HOM05D024396 ORTHO05D005052 9.2e-06 56.6 54 57.4
Medtr4g054245 Medicago truncatula HOM05D024396 ORTHO05D005052 9.2e-06 56.6 54 57.4


User provided reference genes

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