Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 3.2e-203 711.4 345 100.0
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.3e-111 407.1 407 55.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 5.7e-91 338.6 367 51.0
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 8.5e-87 324.7 381 47.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.6e-85 320.5 366 46.7
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 1.4e-84 317.4 378 47.4
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.3e-82 310.8 377 46.4
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 3.7e-82 309.3 377 45.1
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 7.0e-81 305.1 391 44.5
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.3e-79 300.8 385 46.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 3.3e-78 296.2 304 52.3
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 6.1e-77 292.0 377 44.6
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.4e-76 290.8 377 44.6
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 5.2e-76 288.9 375 45.3
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.5e-75 287.3 375 43.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 4.4e-75 285.8 375 42.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.9e-71 272.7 377 43.0
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 1.1e-70 271.2 379 43.0
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.5e-70 270.0 370 42.4
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 5.6e-70 268.9 382 42.1
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 6.2e-69 265.4 366 41.5
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 8.0e-69 265.0 379 42.2
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.0e-67 260.4 373 41.0
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 7.5e-67 258.5 375 40.3
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 4.9e-66 255.8 383 41.5
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 6.4e-66 255.4 475 35.6
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 6.4e-66 255.4 372 40.1
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 8.3e-66 255.0 455 37.1
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 2.4e-65 253.4 379 39.6
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.4e-65 253.4 378 38.6
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.2e-64 251.1 370 41.9
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.2e-64 251.1 428 38.3
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.6e-64 250.8 370 39.5
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.6e-64 250.8 376 38.6
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.0e-64 250.4 371 40.4
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 2.0e-64 250.4 378 39.4
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.7e-64 250.0 414 37.4
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 1.0e-63 248.1 389 39.3
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.3e-63 247.7 381 38.6
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.7e-63 247.3 388 37.9
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 6.6e-63 245.4 428 38.1
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.1e-62 244.6 375 39.2
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 2.5e-62 243.4 369 36.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 3.3e-62 243.0 391 37.6
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 3.3e-62 243.0 371 38.5
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.3e-62 242.7 379 37.5
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 5.6e-62 242.3 446 35.4
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 7.3e-62 241.9 388 36.6
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.2e-61 241.1 373 37.8
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 2.1e-61 240.4 371 37.7
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 4.7e-61 239.2 367 39.2
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.1e-60 238.0 371 37.5
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 2.6e-59 233.4 374 38.5
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 3.4e-59 233.0 376 36.7
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 7.5e-59 231.9 393 37.2
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 2.9e-58 229.9 377 36.3
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 6.4e-58 228.8 195 52.8
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 1.4e-57 227.6 323 44.0
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.2e-56 224.6 326 39.9
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 7.8e-56 221.9 368 37.0
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.3e-55 221.1 452 33.0
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.3e-55 221.1 373 36.2
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.7e-55 220.7 374 37.7
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-55 220.7 370 36.5
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.5e-54 214.9 174 55.2
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 6.2e-53 212.2 370 35.4
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-51 208.0 349 35.8
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.3e-50 204.5 352 35.2
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.1e-49 201.4 367 35.7
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.1e-49 201.4 356 33.7
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.2e-49 199.9 444 32.7
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.6e-48 197.6 369 35.2
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 3.5e-48 196.4 371 36.1
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 4.6e-48 196.1 281 44.1
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-47 194.9 369 36.0
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.5e-46 190.3 171 49.1
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.6e-45 186.4 337 34.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 4.7e-45 186.0 370 34.1
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 6.2e-45 185.7 263 40.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 3.1e-44 183.3 411 31.9
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 3.1e-44 183.3 371 31.8
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.9e-44 182.2 447 31.1
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.0e-43 180.6 185 42.7
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 3.4e-43 179.9 362 29.0
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 7.6e-43 178.7 337 35.3
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.3e-42 177.9 194 44.3
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.8e-42 176.4 213 43.7
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 4.2e-41 172.9 338 35.5
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 1.2e-40 171.4 173 44.5
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.6e-40 171.0 376 33.2
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 6.0e-40 169.1 159 45.3
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.3e-39 167.9 368 29.6
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 2.3e-39 167.2 184 41.8
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.3e-39 167.2 159 45.9
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 3.0e-39 166.8 369 29.5
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.9e-39 166.4 203 41.4
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-38 164.5 216 40.7
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-38 164.5 216 40.7
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.5e-38 164.5 151 54.3
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 9.6e-38 161.8 182 43.4
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 4.8e-37 159.5 191 40.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 6.2e-37 159.1 207 38.2
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.2e-37 159.1 202 40.6
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.1e-36 158.3 191 39.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.4e-36 157.9 368 29.6
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 6.9e-36 155.6 222 38.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.5e-35 154.5 227 34.4
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-35 154.5 187 39.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.0e-35 154.1 188 36.7
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 5.8e-35 152.5 147 50.3
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 7.6e-35 152.1 366 29.5
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 7.6e-35 152.1 223 37.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 3.8e-34 149.8 232 36.2
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.8e-34 149.8 184 41.3
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 3.8e-34 149.8 367 29.7
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 6.4e-34 149.1 190 41.1
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 6.4e-34 149.1 207 39.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-33 147.9 173 43.9
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.4e-33 147.9 173 43.9
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.9e-33 147.5 350 34.6
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 2.4e-33 147.1 243 36.2
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 4.2e-33 146.4 190 48.9
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 4.2e-33 146.4 363 29.2
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 7.1e-33 145.6 278 33.8
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 3.5e-32 143.3 159 44.7
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.0e-32 142.5 159 44.7
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 6.0e-32 142.5 194 37.6
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 6.0e-32 142.5 211 34.1
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 7.9e-32 142.1 165 41.2
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.3e-31 140.6 156 44.2
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.0e-31 140.2 142 47.2
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 3.9e-31 139.8 273 34.1
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 8.7e-31 138.7 198 34.8
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 1.9e-30 137.5 163 43.6
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 6.2e-29 132.5 359 27.9
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.8e-27 125.9 94 57.4
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 9.9e-27 125.2 236 37.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 4.2e-25 119.8 165 36.4
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 4.2e-25 119.8 165 36.4
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-24 117.5 165 35.8
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.3e-23 114.8 200 32.5
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 6.7e-23 112.5 73 61.6
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 6.7e-23 112.5 113 46.0
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 8.7e-23 112.1 345 25.2
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.1e-22 111.7 72 59.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 3.3e-22 110.2 324 27.2
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.4e-20 104.8 134 38.1
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.0e-20 103.2 160 32.5
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.6e-19 100.5 358 26.0
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 5.8e-19 99.4 139 35.3
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 7.6e-19 99.0 242 33.1
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 3.8e-18 96.7 180 29.4
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.9e-17 94.4 258 29.5
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 7.1e-17 92.4 251 32.7
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.6e-16 89.7 65 50.8
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 1.3e-13 81.6 137 29.2
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 2.2e-13 80.9 138 34.1
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 5.9e-11 72.8 136 27.2
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.0e-10 72.0 92 38.0
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.9e-10 70.5 53 54.7
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 3.2e-09 67.0 130 35.4
QL06p016028 Quercus lobata HOM05D003860 ORTHO05D004218 1.2e-08 65.1 78 53.8
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 1.6e-08 64.7 40 65.0
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-08 64.3 107 32.7
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 2.1e-08 64.3 107 32.7
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 1.4e-07 61.6 56 46.4
Sopen11g007360 Solanum pennellii HOM05D001580 ORTHO05D001517 3.0e-07 60.5 146 28.8
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 3.0e-07 60.5 37 59.5


User provided reference genes

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