Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 2.7e-46 188.3 97 100.0
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 7.1e-39 163.7 97 84.5
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 3.4e-33 144.8 97 76.3
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 1.8e-29 132.5 96 72.9
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 3.0e-29 131.7 98 70.4
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 3.3e-28 128.3 101 69.3
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 4.3e-28 127.9 101 69.3
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 3.7e-27 124.8 100 68.0
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 4.8e-27 124.4 99 67.7
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 6.2e-27 124.0 94 70.2
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 2.6e-25 118.6 97 66.0
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 3.4e-25 118.2 101 66.3
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 7.6e-25 117.1 103 61.2
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 1.3e-24 116.3 76 78.9
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.3e-24 116.3 97 60.8
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.3e-24 116.3 94 64.9
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.9e-24 115.2 97 60.8
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 6.4e-24 114.0 95 66.3
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.4e-24 113.6 95 65.3
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 8.4e-24 113.6 95 65.3
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 2.4e-23 112.1 92 68.5
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 3.2e-23 111.7 97 61.9
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 1.2e-22 109.8 97 61.9
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.6e-22 109.4 97 61.9
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 2.7e-22 108.6 98 60.2
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.7e-22 108.6 94 61.7
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 6.0e-22 107.5 97 58.8
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 7.9e-22 107.1 89 65.2
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.0e-21 106.7 95 62.1
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 3.9e-21 104.8 94 60.6
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 5.1e-21 104.4 94 54.3
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 6.7e-21 104.0 101 55.4
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 8.7e-21 103.6 91 61.5
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 8.7e-21 103.6 61 78.7
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 1.5e-20 102.8 106 57.5
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.5e-20 102.1 94 54.3
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.5e-20 102.1 93 63.4
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 5.6e-20 100.9 70 70.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 7.4e-20 100.5 100 52.0
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 7.4e-20 100.5 94 51.1
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 1.6e-19 99.4 94 51.1
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.8e-19 98.6 77 70.1
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 4.8e-19 97.8 91 53.8
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 4.8e-19 97.8 101 57.4
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 6.2e-19 97.4 89 57.3
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.2e-19 97.4 101 53.5
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.1e-18 96.7 94 51.1
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.8e-18 95.9 96 58.3
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 2.4e-18 95.5 66 68.2
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 4.0e-18 94.7 79 64.6
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 4.0e-18 94.7 73 63.0
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 5.3e-18 94.4 79 65.8
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 6.9e-18 94.0 95 53.7
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 6.9e-18 94.0 69 65.2
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 6.9e-18 94.0 94 47.9
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 1.2e-17 93.2 104 53.8
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.5e-17 92.8 93 59.1
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.0e-17 92.4 78 62.8
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 2.0e-17 92.4 93 60.2
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 3.4e-17 91.7 122 45.1
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.4e-17 91.7 100 56.0
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 4.5e-17 91.3 79 64.6
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 4.5e-17 91.3 92 56.5
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 4.5e-17 91.3 92 56.5
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 4.5e-17 91.3 104 52.9
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 7.6e-17 90.5 66 68.2
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 7.6e-17 90.5 103 53.4
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 1.0e-16 90.1 62 69.4
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 1.0e-16 90.1 62 69.4
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.3e-16 89.7 87 54.0
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.3e-16 89.7 96 50.0
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.3e-16 89.7 98 51.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.7e-16 89.4 93 55.9
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-16 89.4 92 55.4
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 2.2e-16 89.0 67 65.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.9e-16 88.6 98 50.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 3.8e-16 88.2 66 62.1
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 8.4e-16 87.0 74 64.9
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.4e-15 86.3 56 69.6
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.9e-15 85.9 103 55.3
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 2.5e-15 85.5 77 59.7
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 2.5e-15 85.5 98 48.0
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.2e-15 84.7 107 48.6
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 5.5e-15 84.3 98 55.1
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 7.1e-15 84.0 80 61.2
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 1.2e-14 83.2 99 48.5
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.6e-14 82.8 77 55.8
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-14 82.4 61 62.3
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-14 82.4 61 62.3
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 2.1e-14 82.4 74 59.5
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 2.1e-14 82.4 91 52.7
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 4.6e-14 81.3 76 61.8
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 4.6e-14 81.3 97 48.5
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 4.6e-14 81.3 66 60.6
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 4.6e-14 81.3 66 60.6
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 6.0e-14 80.9 61 60.7
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 6.0e-14 80.9 61 60.7
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 7.9e-14 80.5 60 60.0
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 7.9e-14 80.5 70 55.7
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 7.9e-14 80.5 65 53.8
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.3e-13 79.7 74 52.7
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 1.8e-13 79.3 89 49.4
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 3.0e-13 78.6 84 57.1
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 3.3e-12 75.1 54 63.0
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 3.3e-12 75.1 74 56.8
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.3e-11 73.2 124 43.5
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 2.8e-11 72.0 54 59.3
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 3.7e-11 71.6 54 57.4
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 4.8e-11 71.2 41 78.0
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 8.2e-11 70.5 54 59.3
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 8.2e-11 70.5 54 59.3
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 8.2e-11 70.5 82 50.0
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 2.4e-10 68.9 47 68.1
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 2.4e-10 68.9 54 64.8
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 3.1e-10 68.6 53 56.6
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.1e-10 68.6 81 49.4
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 5.3e-10 67.8 81 49.4
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 6.9e-10 67.4 46 67.4
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 9.0e-10 67.0 94 46.8
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 9.0e-10 67.0 94 46.8
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.2e-09 66.6 55 63.6
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 1.0e-08 63.5 58 53.4
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 1.0e-08 63.5 58 53.4
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 1.0e-08 63.5 58 53.4
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 1.3e-08 63.2 70 54.3
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.3e-08 63.2 50 64.0
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.2e-08 62.4 53 62.3
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 1.4e-07 59.7 53 54.7
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 4.2e-07 58.2 38 65.8
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 2.1e-06 55.8 78 50.0
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 2.1e-06 55.8 97 37.1
Zm00001eb003130 Zea mays HOM05D005475 ORTHO05D006575 6.1e-06 54.3 53 56.6
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 7.9e-06 53.9 76 44.7


User provided reference genes

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