Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.7e-61 238.0 120 100.0
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.1e-54 216.5 128 88.3
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 4.3e-54 214.5 128 85.9
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.6e-53 212.6 127 85.8
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 8.2e-53 210.3 131 82.4
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.1e-52 209.9 120 89.2
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.4e-52 209.5 120 89.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 1.4e-52 209.5 128 85.9
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.3e-52 207.6 130 83.8
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 9.0e-52 206.8 128 82.0
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 3.4e-51 204.9 129 83.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.0e-50 203.4 127 83.5
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 1.0e-50 203.4 132 82.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.7e-50 202.6 128 82.8
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 5.0e-50 201.1 128 83.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 5.0e-50 201.1 120 84.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.5e-50 200.7 123 87.0
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 9.4e-49 196.8 128 80.5
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.2e-48 196.4 128 80.5
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.6e-48 196.1 128 79.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.6e-48 196.1 128 79.7
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-48 196.1 128 79.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.7e-48 195.3 129 81.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 4.6e-48 194.5 122 82.8
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.1e-48 194.1 128 81.2
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 7.9e-48 193.7 128 78.9
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.4e-47 193.0 128 75.8
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 5.1e-47 191.0 128 77.3
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 8.8e-47 190.3 123 80.5
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 8.8e-47 190.3 123 80.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.7e-46 186.8 131 79.4
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 76.6
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.3e-45 186.4 126 77.8
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.7e-45 186.0 124 76.6
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.2e-45 185.7 128 75.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.2e-45 185.7 131 76.3
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.2e-45 185.7 123 78.9
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 2.8e-45 185.3 128 78.9
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.8e-45 185.3 130 74.6
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.7e-45 184.9 122 80.3
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.7e-45 184.9 122 80.3
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.7e-45 184.9 122 80.3
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 3.7e-45 184.9 122 80.3
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.7e-45 184.9 121 78.5
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.7e-45 184.9 121 78.5
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 4.8e-45 184.5 120 77.5
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 6.3e-45 184.1 127 77.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-44 183.3 128 78.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.1e-44 183.3 127 77.2
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.8e-44 182.6 127 76.4
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.8e-44 182.6 126 77.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.8e-44 182.6 120 76.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 2.4e-44 182.2 129 79.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.4e-44 182.2 128 74.2
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.4e-44 182.2 130 76.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.1e-44 181.8 127 75.6
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 3.1e-44 181.8 124 78.2
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 5.3e-44 181.0 128 76.6
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 5.3e-44 181.0 127 76.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 5.3e-44 181.0 129 76.7
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 9.1e-44 180.3 130 76.9
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.5e-43 179.5 127 74.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-43 179.5 122 77.9
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.6e-43 178.7 125 76.0
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 3.4e-43 178.3 126 77.8
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 3.4e-43 178.3 126 77.8
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 5.9e-43 177.6 125 74.4
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.7e-43 177.2 130 73.8
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.2e-42 175.6 129 72.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.2e-42 175.6 129 74.4
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.8e-42 174.9 124 77.4
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 3.8e-42 174.9 128 73.4
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 3.8e-42 174.9 124 73.4
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 5.0e-42 174.5 127 75.6
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.5e-42 174.1 122 78.7
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.5e-42 174.1 121 78.5
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.5e-42 174.1 121 78.5
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.1e-41 173.3 127 77.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.1e-41 173.3 127 77.2
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.1e-41 173.3 134 71.6
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-41 173.3 101 86.1
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.9e-41 172.6 132 74.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.2e-41 171.4 123 74.0
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 7.2e-41 170.6 124 76.6
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 7.2e-41 170.6 120 70.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 9.4e-41 170.2 121 76.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 9.4e-41 170.2 126 75.4
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 1.2e-40 169.9 121 73.6
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.6e-40 169.5 132 72.7
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.6e-40 169.5 122 77.0
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.6e-40 169.5 125 76.8
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.1e-40 169.1 129 74.4
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 2.7e-40 168.7 124 74.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.6e-40 168.3 132 72.7
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 7.9e-40 167.2 124 75.8
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.0e-39 166.8 121 71.9
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 1.4e-39 166.4 96 85.4
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.3e-39 165.6 96 86.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.3e-39 165.6 123 71.5
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.3e-39 165.6 127 70.9
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.3e-39 165.6 121 72.7
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 3.0e-39 165.2 129 72.1
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 3.0e-39 165.2 122 73.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 3.0e-39 165.2 117 75.2
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 3.9e-39 164.9 131 72.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 3.9e-39 164.9 122 73.0
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 5.1e-39 164.5 133 66.9
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 5.1e-39 164.5 130 71.5
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 5.1e-39 164.5 130 71.5
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 5.1e-39 164.5 100 84.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 6.7e-39 164.1 129 71.3
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.8e-39 163.7 133 68.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.8e-39 163.7 133 68.4
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-38 163.3 126 72.2
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 4.4e-38 161.4 122 71.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 7.4e-38 160.6 116 71.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.3e-37 159.8 119 71.4
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.2e-37 159.1 122 70.5
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.8e-37 158.7 120 71.7
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 4.8e-37 157.9 122 69.7
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-36 156.4 129 68.2
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-36 156.4 129 68.2
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 1.4e-36 156.4 129 68.2
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 2.4e-36 155.6 122 68.9
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 5.3e-36 154.5 118 69.5
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-35 153.3 118 66.1
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 7.7e-35 150.6 121 64.5
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.5e-33 145.6 124 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 3.2e-33 145.2 119 60.5
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 3.2e-33 145.2 115 70.4
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 3.2e-33 145.2 123 65.0
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.2e-32 143.3 120 65.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 3.6e-32 141.7 125 64.0
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.4e-31 139.8 126 62.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.8e-29 132.1 83 77.1
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.8e-29 132.1 116 62.9
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.8e-28 129.4 93 71.0
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.4e-28 129.0 94 74.5
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.3e-28 127.9 75 82.7
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 4.5e-27 124.8 116 60.3
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-25 120.2 69 89.9
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-25 119.8 109 62.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 9.4e-25 117.1 122 57.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-24 116.7 91 68.1
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.3e-23 112.5 97 62.9
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.5e-22 107.5 78 73.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 3.7e-21 105.1 120 57.5
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 6.3e-21 104.4 71 73.2
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.2e-19 100.1 91 63.7
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.0e-18 97.1 67 67.2
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.2e-17 92.0 69 71.0
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 9.4e-17 90.5 45 100.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 1.6e-16 89.7 67 64.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 8.3e-13 77.4 65 58.5
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.5e-11 72.0 71 54.9


User provided reference genes

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