Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.4e-113 411.4 219 100.0
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 6.6e-77 291.2 215 75.8
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 1.2e-73 280.4 210 75.7
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 1.4e-66 256.9 216 67.6
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 3.1e-66 255.8 216 67.1
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 1.2e-65 253.8 228 63.6
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 6.0e-62 241.5 229 60.7
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 7.6e-57 224.6 220 61.4
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 2.7e-54 216.1 235 57.4
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 3.6e-54 215.7 222 56.8
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 7.9e-54 214.5 216 56.5
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 7.9e-54 214.5 218 57.3
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 5.1e-53 211.8 222 55.0
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.1e-53 211.8 236 55.5
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 6.7e-53 211.5 220 56.8
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.1e-52 210.7 209 59.3
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 1.5e-52 210.3 210 59.5
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 1.9e-52 209.9 222 55.9
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.5e-52 209.5 234 54.7
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.7e-52 208.4 234 55.1
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 7.4e-52 208.0 235 55.3
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 2.8e-51 206.1 235 54.9
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 6.3e-51 204.9 209 56.5
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 3.1e-50 202.6 223 53.8
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 1.5e-49 200.3 213 55.4
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 2.6e-49 199.5 228 52.2
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 3.4e-49 199.1 219 56.2
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 3.4e-49 199.1 218 55.0
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 3.8e-48 195.7 211 55.9
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 5.0e-48 195.3 209 56.0
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 6.5e-48 194.9 211 56.9
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 1.1e-47 194.1 220 54.1
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 5.5e-47 191.8 217 50.7
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 2.1e-46 189.9 192 55.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 3.6e-46 189.1 243 47.3
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.4e-45 187.2 206 52.9
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 1.4e-45 187.2 223 52.9
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.8e-45 186.8 219 52.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 3.0e-45 186.0 254 48.0
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 3.9e-45 185.7 225 52.9
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 5.1e-45 185.3 209 55.0
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.5e-44 183.7 212 53.3
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 2.0e-44 183.3 202 52.5
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 2.6e-44 183.0 211 53.6
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.6e-44 183.0 215 54.0
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 4.4e-44 182.2 227 51.5
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 4.4e-44 182.2 188 56.4
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.7e-43 180.3 231 47.6
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.2e-43 179.9 227 51.5
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 2.2e-43 179.9 187 55.6
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 2.8e-43 179.5 209 53.1
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 6.3e-43 178.3 221 50.2
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 8.2e-43 177.9 195 56.9
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 1.1e-42 177.6 208 52.4
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 1.4e-42 177.2 188 55.3
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 4.1e-42 175.6 214 51.4
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 5.9e-41 171.8 209 48.3
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 5.9e-41 171.8 211 51.7
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 1.3e-40 170.6 171 60.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 1.7e-40 170.2 244 46.3
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 1.7e-40 170.2 219 47.5
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 2.2e-40 169.9 211 47.9
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 2.2e-40 169.9 231 46.3
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 2.9e-40 169.5 212 51.4
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 8.5e-40 167.9 203 51.2
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 4.2e-39 165.6 207 47.8
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.5e-39 165.2 209 47.4
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 2.7e-38 162.9 227 48.0
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 3.6e-38 162.5 243 44.4
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 1.4e-37 160.6 214 48.6
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.8e-37 160.2 204 46.6
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.0e-37 159.5 204 46.6
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 2.0e-36 156.8 224 46.0
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 5.7e-36 155.2 210 47.6
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 7.4e-36 154.8 214 44.4
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 7.4e-36 154.8 223 46.2
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.3e-35 154.1 209 45.9
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 3.7e-35 152.5 175 50.9
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 8.2e-35 151.4 214 45.8
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 7.7e-33 144.8 208 45.2
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 1.3e-32 144.1 132 65.2
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 6.5e-32 141.7 228 42.5
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 8.5e-32 141.4 173 49.1
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 1.1e-31 141.0 207 44.9
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 5.5e-31 138.7 215 44.2
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 1.6e-30 137.1 170 52.9
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 2.1e-30 136.7 231 42.4
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 2.7e-30 136.3 212 44.8
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 3.6e-30 136.0 213 45.1
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.6e-28 129.8 172 50.6
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 9.7e-28 127.9 101 65.3
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 4.8e-27 125.6 199 43.7
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.4e-26 123.2 204 45.1
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 5.3e-26 122.1 212 42.9
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 5.3e-26 122.1 212 42.9
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.0e-25 120.2 209 42.6
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 3.5e-25 119.4 212 41.5
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 3.5e-25 119.4 212 42.5
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 1.3e-24 117.5 191 47.6
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 3.8e-24 115.9 200 44.5
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 6.5e-24 115.2 181 44.2
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 6.5e-24 115.2 221 39.4
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 8.5e-24 114.8 181 45.3
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 8.5e-24 114.8 195 42.6
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 1.1e-23 114.4 192 46.9
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.5e-23 114.0 210 40.0
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.5e-23 114.0 200 42.0
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 3.2e-23 112.8 191 46.6
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 3.2e-23 112.8 191 46.6
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 3.2e-23 112.8 191 46.6
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 5.5e-23 112.1 175 44.0
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 2.7e-22 109.8 203 39.9
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.7e-22 109.8 210 40.5
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 1.0e-21 107.8 103 57.3
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.0e-21 107.8 173 41.6
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.8e-21 107.1 204 41.7
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.5e-20 104.0 98 59.2
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 9.8e-20 101.3 199 37.2
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 4.8e-19 99.0 108 52.8
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 2.4e-18 96.7 126 50.8
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 4.1e-18 95.9 196 39.3
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 4.1e-18 95.9 173 40.5
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.2e-17 94.4 120 49.2
PGSC0003DMG400011585 Solanum tuberosum HOM05D005697 ORTHO05D006951 1.3e-16 90.9 150 40.7
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 6.5e-16 88.6 195 36.9
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.9e-15 87.0 204 36.3
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 2.5e-15 86.7 195 38.5
Nitab4.5_0000451g0070 Nicotiana tabacum HOM05D005697 ORTHO05D006951 4.7e-14 82.4 136 42.6
CDE08G0630 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 8.8e-13 78.2 149 36.9
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 2.0e-12 77.0 143 42.0
Nitab4.5_0000867g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 7.8e-09 65.1 137 37.2


User provided reference genes

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