Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.3e-132 474.9 293 100.0
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 8.3e-99 364.4 300 80.3
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 9.1e-98 360.9 310 77.7
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.7e-96 356.7 305 76.4
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.9e-95 353.2 280 75.4
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 4.4e-92 342.0 310 71.0
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 5.7e-92 341.7 309 73.1
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.1e-90 337.4 294 73.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-90 336.3 296 72.0
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 3.1e-90 335.9 293 71.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 3.1e-90 335.9 306 66.3
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 4.1e-90 335.5 304 67.8
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.0e-89 333.2 311 65.3
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.0e-89 333.2 309 68.3
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 2.7e-89 332.8 283 70.7
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 7.3e-87 324.7 295 72.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.6e-86 322.4 307 64.2
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.0e-85 318.9 300 70.0
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.9e-85 317.8 281 71.5
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.2e-84 317.4 321 60.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.0e-84 316.6 290 73.4
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.5e-84 314.7 293 65.9
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 7.5e-84 314.7 317 65.3
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.3e-83 313.9 322 65.5
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-83 313.5 293 65.9
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.7e-83 313.5 308 67.5
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.7e-83 313.5 299 69.6
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.7e-83 312.4 293 65.5
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 6.4e-83 311.6 307 66.1
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.4e-82 309.7 313 66.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 3.2e-82 309.3 320 66.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.1e-82 308.9 318 67.9
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.0e-81 306.6 318 67.6
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.0e-81 306.6 291 68.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.0e-81 306.6 291 68.7
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.5e-81 305.8 293 67.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 7.8e-81 304.7 290 64.8
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.0e-80 304.3 294 71.1
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-80 303.9 318 62.3
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 3.9e-80 302.4 312 63.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 5.0e-80 302.0 302 68.2
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.6e-80 301.6 293 71.3
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.6e-80 301.6 315 62.2
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.9e-79 300.1 299 68.2
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.9e-79 300.1 309 67.6
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.5e-79 297.7 307 68.1
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.6e-78 297.0 316 69.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.7e-78 295.4 303 68.0
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 4.7e-78 295.4 287 69.3
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 4.7e-78 295.4 313 60.1
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 4.7e-78 295.4 295 67.8
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.7e-78 295.4 277 72.2
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 6.2e-78 295.0 305 63.0
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 8.0e-78 294.7 309 68.3
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 1.1e-77 294.3 297 73.1
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 1.1e-77 294.3 281 73.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 3.1e-77 292.7 301 62.1
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 4.0e-77 292.4 314 63.7
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.9e-77 291.2 296 65.5
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.9e-77 291.2 296 65.5
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.2e-76 290.8 302 63.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.5e-76 290.4 316 70.3
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.6e-76 289.7 295 65.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.8e-76 288.5 309 62.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 7.5e-76 288.1 312 65.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 9.8e-76 287.7 316 62.7
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.7e-75 287.0 300 58.3
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.7e-75 287.0 294 69.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.2e-75 286.6 286 64.7
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.9e-75 286.2 309 61.8
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.9e-75 285.4 321 68.2
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.9e-75 285.4 296 69.6
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 6.4e-75 285.0 298 67.1
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.9e-74 283.5 292 65.8
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-74 282.7 285 70.5
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-74 282.7 285 70.5
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.2e-74 282.7 307 61.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 5.4e-74 282.0 312 59.0
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.0e-74 281.6 297 61.6
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-73 280.4 289 68.5
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.6e-73 280.4 291 62.2
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.7e-73 279.6 344 59.6
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 3.5e-73 279.3 295 66.4
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 6.0e-73 278.5 314 65.3
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.0e-72 277.7 312 67.3
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.3e-72 277.3 294 59.9
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.7e-72 276.9 300 66.3
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 2.3e-72 276.6 311 64.6
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.9e-72 275.8 297 60.3
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.1e-71 274.2 311 64.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.5e-71 273.9 293 61.1
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.3e-71 272.3 301 65.1
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.6e-71 271.9 293 64.5
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 7.3e-71 271.6 304 60.5
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 9.5e-71 271.2 299 56.2
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.1e-69 267.7 309 64.1
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.4e-68 262.3 320 55.9
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 5.8e-68 261.9 304 52.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.2e-67 260.0 395 51.1
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 2.9e-67 259.6 311 55.9
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.9e-67 259.6 297 61.6
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 3.7e-67 259.2 301 63.8
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 3.7e-67 259.2 308 61.7
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.9e-67 258.8 290 58.3
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.1e-66 257.7 299 62.2
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.4e-66 256.5 298 58.4
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 7.1e-66 255.0 309 63.1
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.2e-65 254.2 313 60.4
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.1e-65 253.4 299 63.2
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 2.7e-65 253.1 299 63.2
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.0e-64 249.6 296 58.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 8.6e-64 248.1 286 60.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.1e-63 247.7 311 59.2
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.5e-63 247.3 320 55.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.5e-63 246.5 298 59.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.1e-62 243.4 309 59.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.8e-62 243.0 318 55.3
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.8e-62 243.0 307 59.6
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.4e-61 240.7 298 59.4
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-61 240.7 292 55.1
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.8e-61 240.4 284 56.7
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.4e-61 240.0 295 58.0
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.4e-61 240.0 301 55.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-61 239.6 259 61.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.6e-60 236.5 291 60.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.7e-59 233.8 316 56.0
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.9e-58 230.3 313 59.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.2e-58 229.2 287 60.3
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 6.6e-56 221.9 295 54.6
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 6.6e-56 221.9 285 55.1
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 5.6e-55 218.8 286 54.2
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 9.6e-55 218.0 293 58.7
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.8e-54 216.5 314 60.5
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.6e-54 216.1 303 55.4
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 8.1e-54 214.9 300 50.7
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.4e-53 213.4 132 75.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.0e-52 210.3 289 54.7
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 7.6e-52 208.4 246 66.3
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.2e-50 203.0 132 73.5
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 7.1e-50 201.8 220 60.0
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 9.3e-50 201.4 129 73.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.2e-49 201.1 288 53.8
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.8e-49 198.4 134 67.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.0e-48 196.4 300 53.3
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 6.6e-48 195.3 323 48.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.3e-47 193.0 210 70.5
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.3e-47 192.6 292 53.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.1e-46 190.3 268 52.6
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 7.4e-39 165.2 133 59.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.1e-38 163.7 245 57.1
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-38 163.3 101 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 6.0e-33 145.6 303 51.5
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.8e-32 144.1 298 43.3
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.3e-31 139.4 101 64.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 6.2e-30 135.6 319 48.0
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.4e-29 133.7 321 44.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.1e-29 133.3 197 50.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.2e-28 131.3 334 45.8
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.3e-26 121.7 122 56.6
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-25 121.3 93 68.8
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 3.9e-24 116.3 84 70.2
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 6.7e-24 115.5 99 67.7
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 2.5e-23 113.6 96 63.5
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 8.2e-22 108.6 79 74.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 2.4e-21 107.1 87 69.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.3e-21 105.9 193 59.1
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 6.5e-19 99.0 61 72.1
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 8.5e-19 98.6 139 42.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.9e-18 97.4 75 65.3
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.5e-18 97.1 98 58.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.2e-18 95.5 68 70.6
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.7e-17 93.6 63 71.4
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.0e-16 91.7 130 50.0
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.4e-13 81.3 64 54.7
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.4e-13 81.3 288 42.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 6.9e-13 79.0 92 52.2
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 4.5e-12 76.3 87 54.0
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.7e-12 75.5 44 88.6
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.0e-11 75.1 269 46.1
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.1e-09 67.4 126 49.2
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.3e-08 63.9 74 51.4
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 6.3e-06 55.8 43 72.1


User provided reference genes

Program Settings