Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.4e-119 432.2 219 100.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.5e-65 253.4 219 62.1
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.3e-64 250.4 299 52.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 7.1e-63 244.6 217 62.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 7.9e-62 241.1 241 58.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.1e-60 237.3 226 58.0
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.5e-60 236.9 219 60.7
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 9.6e-60 234.2 218 61.0
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.3e-59 233.8 220 58.2
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.6e-59 233.4 221 58.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.6e-59 233.4 221 58.4
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 2.1e-59 233.0 217 63.1
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.7e-59 232.3 284 50.7
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 3.7e-59 232.3 217 59.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 4.8e-59 231.9 219 58.4
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-58 229.2 220 60.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.1e-58 229.2 220 60.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.0e-57 226.5 221 56.6
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.6e-57 226.1 220 55.5
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.0e-56 224.2 220 56.8
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.3e-56 223.8 220 57.7
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.7e-56 223.4 219 56.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 1.9e-55 219.9 210 56.7
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 5.5e-55 218.4 213 54.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 9.3e-55 217.6 154 72.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.7e-54 216.1 195 60.5
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.6e-54 215.7 223 53.8
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-52 210.3 218 56.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.5e-52 209.5 222 54.1
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 2.5e-52 209.5 227 54.6
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.5e-52 209.5 220 56.8
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 4.3e-52 208.8 218 56.0
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.9e-50 201.4 200 55.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-49 199.1 186 59.7
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 6.5e-48 194.9 216 51.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 1.4e-47 193.7 210 53.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 4.2e-47 192.2 204 54.4
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-46 190.7 158 63.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.1e-46 189.9 182 56.6
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.7e-46 189.5 131 71.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 3.6e-46 189.1 186 55.4
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 7.9e-46 188.0 150 66.0
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.0e-45 187.6 160 59.4
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.3e-45 186.4 195 55.4
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 5.1e-45 185.3 159 60.4
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 5.1e-45 185.3 159 59.7
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 5.1e-45 185.3 160 61.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.1e-44 184.1 135 72.6
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.1e-44 184.1 133 69.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 2.0e-44 183.3 145 64.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 5.7e-44 181.8 159 59.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 5.7e-44 181.8 159 58.5
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.3e-43 180.6 121 73.6
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.3e-43 180.6 168 57.7
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.1e-42 176.0 158 60.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 5.3e-42 175.3 161 57.8
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 6.9e-42 174.9 236 47.0
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 9.1e-42 174.5 191 51.8
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-41 172.9 153 62.1
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 4.5e-41 172.2 177 50.8
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.7e-40 170.2 202 49.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.2e-40 169.9 160 56.2
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.9e-40 169.5 160 56.2
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 8.5e-40 167.9 180 53.3
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.1e-39 167.5 150 59.3
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.2e-39 166.0 169 54.4
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 4.7e-38 162.2 126 65.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.4e-37 160.6 141 60.3
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.8e-37 160.2 147 57.1
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 5.2e-37 158.7 147 56.5
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.7e-36 155.2 134 60.4
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 9.7e-36 154.5 96 79.2
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 2.4e-34 149.8 163 49.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.2e-33 147.5 217 43.8
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.0e-32 144.4 134 53.7
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.0e-32 142.1 223 42.2
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 8.0e-30 134.8 127 52.0
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.0e-28 130.2 151 47.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 6.5e-24 115.2 183 36.6
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.1e-23 114.4 160 35.6
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.1e-23 114.4 142 48.6
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.9e-23 113.6 119 44.5
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.2e-23 112.5 169 37.9
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.2e-23 112.5 121 44.6
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 4.2e-23 112.5 122 41.8
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.5e-23 112.1 121 43.8
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.6e-22 110.5 147 40.8
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.6e-22 110.5 71 76.1
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.6e-22 110.5 121 43.8
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.6e-22 110.5 121 43.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.7e-22 109.8 155 36.1
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.7e-22 109.8 164 33.5
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.6e-22 109.4 145 38.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 6.1e-22 108.6 147 37.4
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.1e-22 108.6 176 35.2
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 8.0e-22 108.2 122 39.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 8.0e-22 108.2 116 44.8
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.0e-21 107.8 122 44.3
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.0e-21 107.8 119 42.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.8e-21 107.1 158 34.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.0e-21 106.3 168 38.1
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 3.0e-21 106.3 121 43.8
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.0e-21 106.3 117 42.7
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.0e-21 105.9 138 37.7
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 6.8e-21 105.1 121 39.7
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 8.8e-21 104.8 148 33.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 8.8e-21 104.8 121 44.6
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.2e-20 104.4 124 40.3
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.2e-20 104.4 122 41.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.2e-20 104.4 119 40.3
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-20 104.4 130 39.2
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.5e-20 104.0 122 41.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.5e-20 104.0 122 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.0e-20 103.6 119 42.9
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 2.0e-20 103.6 120 40.0
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 2.0e-20 103.6 122 41.8
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 2.6e-20 103.2 120 42.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.6e-20 103.2 154 36.4
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 3.4e-20 102.8 84 63.1
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 3.4e-20 102.8 142 40.1
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 9.8e-20 101.3 115 44.3
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 9.8e-20 101.3 158 37.3
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.8e-20 101.3 129 41.1
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 9.8e-20 101.3 121 36.4
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.3e-19 100.9 170 32.4
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.7e-19 100.5 162 34.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.7e-19 100.5 120 41.7
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 3.7e-19 99.4 151 37.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.1e-18 97.8 162 33.3
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.4e-18 97.4 118 39.8
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-18 97.4 144 43.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.4e-18 96.7 122 41.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 5.4e-18 95.5 154 35.1
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.2e-17 94.4 128 37.5
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.6e-17 94.0 119 35.3
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.0e-17 93.6 117 36.8
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 3.5e-17 92.8 165 33.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 4.5e-17 92.4 127 39.4
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 4.5e-17 92.4 149 36.2
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 7.7e-17 91.7 141 34.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-16 90.9 127 38.6
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.7e-16 90.5 139 41.0
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.7e-16 90.5 145 31.7
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 3.8e-16 89.4 93 45.2
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 5.0e-16 89.0 121 40.5
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 5.0e-16 89.0 173 32.4
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.0e-16 89.0 139 40.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.1e-15 87.8 111 38.7
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 6.1e-14 82.0 123 35.0
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 6.8e-13 78.6 74 58.1
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 4.4e-12 75.9 81 42.0
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 4.4e-12 75.9 81 42.0
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 4.4e-12 75.9 120 35.8
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 5.7e-12 75.5 77 45.5
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.7e-12 75.5 122 36.9
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 5.7e-12 75.5 176 29.0
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 9.8e-12 74.7 81 40.7
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 9.8e-12 74.7 138 37.0
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 2.2e-11 73.6 40 87.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 8.3e-11 71.6 195 28.2
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.1e-10 71.2 62 58.1
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.6e-09 67.4 121 33.1
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 2.5e-07 60.1 124 30.6
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.3e-07 59.7 59 50.8
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 2.8e-06 56.6 159 27.7


User provided reference genes

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