Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 3.9e-90 334.7 164 100.0
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.5e-76 288.9 160 88.8
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 2.3e-74 282.3 158 85.4
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.2e-70 270.0 158 80.4
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 2.9e-69 265.4 160 80.0
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 3.8e-69 265.0 138 89.9
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.0e-69 264.6 150 84.0
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 5.0e-69 264.6 150 84.0
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.5e-68 263.1 137 89.1
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.9e-68 262.7 151 83.4
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 4.2e-68 261.5 151 81.5
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 5.5e-68 261.2 148 81.1
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 1.2e-67 260.0 148 81.8
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.6e-67 259.6 155 79.4
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.7e-67 258.8 152 80.9
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 3.6e-67 258.5 155 78.7
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 8.0e-67 257.3 160 76.2
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 8.0e-67 257.3 137 83.9
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 1.0e-66 256.9 148 79.7
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 2.3e-66 255.8 148 79.7
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 3.0e-66 255.4 148 78.4
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 4.0e-66 255.0 161 76.4
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 4.0e-66 255.0 150 79.3
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 5.2e-66 254.6 162 73.5
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.2e-66 254.6 160 76.2
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 5.2e-66 254.6 160 76.2
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 5.2e-66 254.6 164 75.0
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 6.7e-66 254.2 151 78.1
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 6.7e-66 254.2 151 77.5
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 6.7e-66 254.2 156 77.6
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 6.7e-66 254.2 167 71.9
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 8.8e-66 253.8 152 79.6
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 8.8e-66 253.8 138 82.6
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.2e-65 253.4 147 81.6
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 1.2e-65 253.4 164 72.6
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 1.2e-65 253.4 155 78.1
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.2e-65 253.4 156 77.6
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.2e-65 253.4 161 74.5
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.2e-65 253.4 160 76.9
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 1.5e-65 253.1 149 79.2
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 1.5e-65 253.1 154 76.0
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.5e-65 253.1 162 72.2
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.5e-65 253.1 153 77.1
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.5e-65 253.1 153 77.1
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 1.5e-65 253.1 157 77.1
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.0e-65 252.7 153 77.1
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 2.0e-65 252.7 139 86.3
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 2.6e-65 252.3 174 72.4
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 2.6e-65 252.3 158 74.1
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 3.3e-65 251.9 151 75.5
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 3.3e-65 251.9 164 73.8
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 4.4e-65 251.5 151 76.2
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 4.4e-65 251.5 151 76.2
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 4.4e-65 251.5 151 76.2
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 4.4e-65 251.5 151 76.2
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 4.4e-65 251.5 151 76.2
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 4.4e-65 251.5 155 77.4
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 5.7e-65 251.1 154 77.9
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 9.7e-65 250.4 158 74.7
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 9.7e-65 250.4 152 76.3
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 1.3e-64 250.0 151 75.5
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 1.7e-64 249.6 158 72.8
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 2.2e-64 249.2 157 74.5
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 4.8e-64 248.1 159 75.5
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 6.3e-64 247.7 151 74.2
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 6.3e-64 247.7 151 74.2
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 6.3e-64 247.7 136 82.4
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 8.2e-64 247.3 149 77.9
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 8.2e-64 247.3 149 77.9
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.1e-63 246.9 149 79.2
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 1.4e-63 246.5 135 84.4
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.4e-63 246.5 135 84.4
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 1.8e-63 246.1 152 75.7
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.8e-63 246.1 157 73.9
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 1.8e-63 246.1 147 78.2
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 1.8e-63 246.1 147 78.2
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.4e-63 245.7 135 83.7
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 2.4e-63 245.7 163 71.8
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 7.0e-63 244.2 138 79.7
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 9.1e-63 243.8 135 80.7
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.2e-62 243.4 156 73.7
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 1.2e-62 243.4 150 74.0
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-62 243.0 150 74.0
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.6e-62 243.0 150 74.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 2.0e-62 242.7 160 72.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 2.7e-62 242.3 149 77.2
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 5.9e-62 241.1 150 72.7
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 7.7e-62 240.7 158 72.2
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 1.0e-61 240.4 135 80.0
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.3e-61 240.0 152 73.7
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 1.3e-61 240.0 149 75.8
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.2e-61 239.2 159 71.7
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 2.2e-61 239.2 160 68.8
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.9e-61 238.8 159 71.7
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 2.9e-61 238.8 149 75.2
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 6.5e-61 237.7 151 74.2
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.9e-60 236.1 150 71.3
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.5e-60 235.7 134 79.1
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 3.2e-60 235.3 154 74.0
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 6.1e-59 231.1 148 73.6
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 8.0e-59 230.7 160 66.2
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.4e-58 229.9 134 76.9
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.5e-57 226.5 148 69.6
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 2.0e-57 226.1 161 65.2
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 2.6e-57 225.7 132 75.8
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.4e-57 225.3 182 62.6
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 5.7e-57 224.6 182 63.2
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.7e-56 223.0 187 61.0
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 2.8e-56 222.2 174 63.2
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 6.5e-53 211.1 158 69.6
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 8.6e-53 210.7 142 69.0
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 1.9e-52 209.5 131 71.8
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 5.2e-50 201.4 137 71.5
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.3e-45 186.8 151 60.3
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 1.7e-45 186.4 97 87.6
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 5.0e-45 184.9 100 84.0
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.2e-43 180.3 156 53.2
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 4.7e-43 178.3 153 54.2
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 1.6e-35 153.3 83 83.1
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 2.6e-25 119.4 72 76.4
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 4.9e-24 115.2 83 62.7
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 2.6e-17 92.8 82 56.1
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 9.9e-17 90.9 149 34.9
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 7.8e-14 81.3 130 36.2
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 7.8e-06 54.7 58 51.7


User provided reference genes

Program Settings