Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 4.0e-61 238.0 132 100.0
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 1.6e-38 162.9 131 72.5
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 4.5e-36 154.8 129 69.8
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.0e-35 153.7 131 58.8
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 5.0e-35 151.4 130 60.8
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 8.5e-35 150.6 128 65.6
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 9.3e-34 147.1 128 66.4
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 3.3e-31 138.7 132 63.6
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 5.7e-31 137.9 129 64.3
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.3e-30 136.7 130 61.5
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 4.5e-28 128.3 132 56.8
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.7e-27 126.3 130 60.8
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 2.2e-27 125.9 129 63.6
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 7.9e-25 117.5 130 60.0
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.3e-24 115.9 126 57.1
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 3.9e-24 115.2 140 55.7
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 1.5e-23 113.2 126 55.6
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 1.5e-23 113.2 126 55.6
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 5.7e-23 111.3 128 53.9
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 1.3e-22 110.2 132 57.6
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 3.7e-22 108.6 112 61.6
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 3.1e-21 105.5 135 55.6
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 4.5e-20 101.7 127 58.3
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.3e-19 100.1 126 54.0
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 5.0e-19 98.2 127 58.3
Actinidia11440 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.9e-18 96.3 130 46.9
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.2e-18 95.5 125 52.0
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 9.4e-18 94.0 128 53.1
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 6.1e-17 91.3 120 56.7
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.8e-16 89.7 132 48.5
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 1.8e-16 89.7 130 56.9
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 3.9e-16 88.6 132 42.4
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 5.2e-16 88.2 131 50.4
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 8.8e-16 87.4 127 51.2
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 2.0e-15 86.3 132 41.7
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 3.3e-15 85.5 128 46.9
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 3.3e-15 85.5 129 52.7
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 4.4e-15 85.1 132 49.2
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 5.7e-15 84.7 123 51.2
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 9.7e-15 84.0 114 49.1
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.3e-14 83.6 128 43.0
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 1.7e-14 83.2 117 53.0
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 2.8e-14 82.4 133 48.1
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 2.8e-14 82.4 131 48.9
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 6.3e-14 81.3 131 49.6
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.1e-13 80.5 148 42.6
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 1.4e-13 80.1 139 49.6
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 1.4e-13 80.1 130 49.2
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.8e-13 79.7 129 43.4
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 4.1e-13 78.6 139 49.6
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 5.3e-13 78.2 130 43.8
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 5.3e-13 78.2 76 65.8
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.2e-12 77.0 148 45.3
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 1.2e-12 77.0 125 48.0
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 2.6e-12 75.9 73 54.8
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 2.6e-12 75.9 118 50.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 3.5e-12 75.5 138 49.3
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 7.7e-12 74.3 144 47.9
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.0e-11 73.9 128 46.9
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 1.3e-11 73.6 130 45.4
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 1.7e-11 73.2 148 45.9
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 2.9e-11 72.4 138 47.8
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 3.8e-11 72.0 118 46.6
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 5.0e-11 71.6 143 48.3
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 5.0e-11 71.6 84 57.1
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 6.5e-11 71.2 124 41.9
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 6.5e-11 71.2 140 37.9
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 8.5e-11 70.9 121 44.6
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 87 58.6
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.5e-10 70.1 129 47.3
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.5e-10 70.1 129 47.3
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.9e-10 69.7 113 46.0
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.9e-10 69.7 125 43.2
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 1.9e-10 69.7 126 38.9
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 2.5e-10 69.3 125 46.4
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 3.2e-10 68.9 138 46.4
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 5.5e-10 68.2 83 56.6
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 9.4e-10 67.4 128 45.3
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 1.2e-09 67.0 130 45.4
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.1e-09 66.2 129 46.5
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 3.6e-09 65.5 40 80.0
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 6.1e-09 64.7 87 56.3
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 6.1e-09 64.7 87 56.3
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 8.0e-09 64.3 129 43.4
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 8.0e-09 64.3 143 42.7
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 8.0e-09 64.3 145 44.8
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 1.4e-08 63.5 130 43.8
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 2.3e-08 62.8 39 79.5
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 3.0e-08 62.4 79 45.6
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 3.0e-08 62.4 77 58.4
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 4.0e-08 62.0 126 43.7
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 4.0e-08 62.0 142 44.4
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 5.2e-08 61.6 131 45.0
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 1.5e-07 60.1 77 55.8
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 5.7e-07 58.2 128 42.2
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 5.7e-07 58.2 77 58.4
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.3e-06 57.0 77 53.2
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 4.8e-06 55.1 38 71.1


User provided reference genes

Program Settings