Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.2e-100 369.8 178 100.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 8.1e-57 224.2 142 75.4
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-56 223.4 142 74.6
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 3.8e-54 215.3 141 71.6
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 4.0e-48 195.3 143 66.4
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 7.6e-47 191.0 144 65.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.6e-47 191.0 144 65.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.6e-47 191.0 144 65.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 9.9e-47 190.7 144 66.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 9.9e-47 190.7 144 64.6
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.3e-46 190.3 149 63.1
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.7e-46 189.9 143 62.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-46 189.9 162 59.9
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-46 189.9 162 59.9
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-46 189.9 144 64.6
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.8e-46 188.7 143 62.2
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 3.8e-46 188.7 142 62.7
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.9e-46 188.3 138 63.8
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 6.4e-46 188.0 143 63.6
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 8.4e-46 187.6 143 62.9
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.9e-45 186.4 143 62.9
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.4e-45 186.0 143 61.5
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.4e-45 186.0 143 63.6
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 3.2e-45 185.7 144 60.4
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 3.2e-45 185.7 141 63.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 5.5e-45 184.9 144 62.5
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 7.1e-45 184.5 143 61.5
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 9.3e-45 184.1 144 61.8
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 9.3e-45 184.1 143 64.3
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.2e-44 183.7 133 63.9
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.6e-44 183.3 143 61.5
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 2.1e-44 183.0 143 62.9
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.5e-44 182.2 139 61.9
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.5e-44 182.2 139 61.9
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.5e-44 182.2 139 61.9
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 6.0e-44 181.4 144 61.8
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 7.9e-44 181.0 141 58.9
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 7.9e-44 181.0 139 61.9
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.8e-43 179.9 143 60.1
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 2.3e-43 179.5 139 63.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.0e-43 179.1 143 60.8
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 5.1e-43 178.3 141 58.2
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.7e-43 177.9 143 60.8
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 8.7e-43 177.6 144 61.1
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 8.7e-43 177.6 141 58.9
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.5e-42 176.8 143 57.3
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.5e-42 176.8 138 62.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.5e-42 176.8 143 60.8
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.5e-42 176.8 141 61.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.5e-42 176.8 143 58.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.5e-42 176.8 139 59.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 1.9e-42 176.4 143 60.8
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.9e-42 176.4 143 58.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.9e-42 176.4 144 58.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.5e-42 176.0 143 55.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.5e-42 176.0 143 57.3
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.5e-42 176.0 143 59.4
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.5e-42 176.0 143 59.4
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.3e-42 175.3 143 60.1
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 55.9
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 55.2
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 55.2
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 60.1
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 5.6e-42 174.9 141 59.6
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 60.1
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 5.6e-42 174.9 143 59.4
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 7.4e-42 174.5 143 60.1
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 7.4e-42 174.5 132 59.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 9.6e-42 174.1 141 58.2
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 9.6e-42 174.1 132 59.8
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.6e-41 173.3 143 55.2
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-41 173.3 143 57.3
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.6e-41 173.3 141 56.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.1e-41 172.9 142 57.7
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 2.1e-41 172.9 137 60.6
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.8e-41 172.6 132 58.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 2.8e-41 172.6 143 54.5
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.8e-41 172.6 143 56.6
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 6.2e-41 171.4 143 56.6
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 8.2e-41 171.0 141 59.6
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 8.2e-41 171.0 143 56.6
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.4e-40 170.2 142 53.5
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.4e-40 170.2 141 56.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.8e-40 169.9 142 56.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.4e-40 169.5 143 55.9
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 4.0e-40 168.7 137 59.1
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 6.9e-40 167.9 144 54.2
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 6.9e-40 167.9 137 56.9
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 6.9e-40 167.9 137 59.1
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 9.0e-40 167.5 143 55.2
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 9.0e-40 167.5 143 55.9
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 9.0e-40 167.5 141 56.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 9.0e-40 167.5 135 57.8
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 1.2e-39 167.2 137 58.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.2e-39 167.2 142 54.9
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.5e-39 166.8 144 56.9
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 2.0e-39 166.4 142 55.6
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 3.4e-39 165.6 155 51.0
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 3.4e-39 165.6 150 54.0
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 4.5e-39 165.2 143 55.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 5.8e-39 164.9 143 58.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 7.6e-39 164.5 136 56.6
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.3e-38 163.7 138 55.8
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.2e-38 162.9 142 54.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 2.9e-38 162.5 154 51.9
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 3.8e-38 162.2 136 55.1
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.9e-38 161.8 143 55.2
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.9e-38 161.8 142 55.6
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 6.5e-38 161.4 153 51.6
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 8.4e-38 161.0 154 51.9
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-37 160.2 143 54.5
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.4e-37 160.2 133 55.6
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.9e-37 159.8 135 56.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 3.2e-37 159.1 173 48.0
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.2e-36 157.1 141 51.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 6.0e-36 154.8 144 51.4
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 6.0e-36 154.8 144 51.4
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.9e-36 154.5 143 50.3
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.9e-36 154.5 143 49.7
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.0e-35 154.1 143 50.3
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.0e-35 154.1 146 51.4
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.0e-35 154.1 146 51.4
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.3e-35 153.7 136 50.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.8e-35 153.3 143 51.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.8e-35 153.3 143 50.3
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 3.0e-35 152.5 136 52.2
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-34 150.6 163 49.7
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.5e-34 150.2 143 50.3
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 3.3e-34 149.1 137 53.3
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 9.7e-34 147.5 215 39.5
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-33 146.7 143 48.3
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.7e-33 145.6 142 47.9
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 5.3e-32 141.7 142 47.2
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 9.0e-32 141.0 107 62.6
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-31 140.6 186 43.0
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.5e-31 140.2 132 51.5
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-31 139.4 132 50.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.9e-31 138.3 141 52.5
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-30 136.7 123 53.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 3.8e-30 135.6 108 57.4
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 3.8e-30 135.6 108 57.4
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.4e-29 133.7 92 69.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 4.2e-29 132.1 107 57.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 2.7e-28 129.4 96 65.6
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 4.6e-28 128.6 120 53.3
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 4.6e-28 128.6 120 53.3
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 4.6e-28 128.6 143 45.5
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.0e-27 127.5 100 60.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.3e-25 118.2 133 47.4
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-24 116.3 144 45.8
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.3e-24 115.2 82 63.4
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 5.9e-23 111.7 131 42.7
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.6e-20 103.6 129 38.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.1e-20 103.2 82 56.1
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 6.1e-20 101.7 82 58.5
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-19 100.1 132 40.9
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 8.8e-19 97.8 91 51.6
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 1.1e-18 97.4 88 52.3
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.5e-18 97.1 82 53.7
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.1e-16 90.9 129 31.0
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.4e-16 90.5 126 34.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.9e-14 82.8 140 29.3
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-13 80.9 131 35.9
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.2e-13 79.3 96 39.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-12 77.4 73 52.1
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.2e-12 77.4 56 62.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 1.0e-11 74.3 51 66.7
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 8.8e-11 71.2 98 40.8
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 8.8e-11 71.2 104 27.9
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 3.3e-10 69.3 133 26.3
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.2e-09 66.6 82 45.1
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 4.1e-08 62.4 135 24.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-07 60.5 62 46.8
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 1.3e-06 57.4 128 27.3


User provided reference genes

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