Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 3.7e-202 708.0 358 100.0
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 4.0e-148 528.5 360 75.6
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 1.8e-143 513.1 362 72.7
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 1.2e-139 500.4 346 73.4
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 6.7e-119 431.4 342 62.6
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 7.4e-118 427.9 359 61.3
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 8.5e-114 414.5 340 60.9
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 2.7e-112 409.5 347 60.8
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 8.0e-112 407.9 340 60.3
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 1.4e-111 407.1 359 58.2
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.2e-110 404.1 360 58.9
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.5e-110 403.7 361 58.2
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 2.6e-110 402.9 365 58.9
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 4.4e-110 402.1 358 59.8
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 6.3e-109 398.3 335 59.1
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.1e-108 397.5 354 58.8
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 7.0e-108 394.8 338 61.2
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 1.0e-106 391.0 356 58.4
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-106 391.0 360 58.1
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-106 391.0 360 58.1
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 1.0e-106 391.0 360 58.1
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.9e-105 386.7 362 59.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 2.5e-105 386.3 347 60.5
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 2.7e-104 382.9 353 58.4
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 4.7e-104 382.1 340 58.8
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 1.0e-103 380.9 340 57.9
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 1.8e-103 380.2 367 57.5
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 2.3e-103 379.8 360 57.8
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 4.4e-102 375.6 357 56.9
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 9.8e-102 374.4 358 57.0
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 1.7e-101 373.6 360 56.7
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 1.7e-101 373.6 340 57.6
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 8.3e-101 371.3 343 56.6
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 1.2e-99 367.5 360 54.4
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 1.6e-99 367.1 360 53.9
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 7.7e-99 364.8 343 55.1
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 7.7e-99 364.8 339 56.3
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.8e-98 362.5 363 54.8
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 8.6e-98 361.3 344 54.4
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 1.2e-96 357.5 345 51.9
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 3.6e-96 355.9 334 56.3
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.4e-95 354.0 341 55.7
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 5.2e-95 352.1 352 54.0
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 1.5e-94 350.5 352 53.7
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 2.0e-94 350.1 352 53.1
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 3.4e-94 349.4 333 55.3
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 4.4e-94 349.0 346 53.2
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 9.8e-94 347.8 327 53.8
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 1.3e-93 347.4 337 53.7
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 2.2e-93 346.7 363 51.8
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 2.4e-92 343.2 346 52.6
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 5.4e-92 342.0 337 53.1
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.0e-91 340.1 336 53.3
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 5.9e-91 338.6 358 52.0
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 6.6e-90 335.1 341 54.5
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 1.5e-89 334.0 350 51.1
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.3e-89 332.8 353 51.6
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 9.5e-89 331.3 362 51.9
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 8.9e-87 324.7 353 51.6
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 9.8e-86 321.2 359 49.6
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 6.4e-85 318.5 336 49.4
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.8e-84 317.0 301 54.8
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 7.8e-83 311.6 366 47.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 6.6e-82 308.5 330 48.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 6.6e-82 308.5 339 51.0
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.5e-81 307.4 340 49.4
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 5.6e-81 305.4 355 49.0
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 9.5e-81 304.7 358 47.8
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 2.1e-80 303.5 340 50.3
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 7.5e-78 295.0 360 46.7
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 1.7e-77 293.9 358 46.1
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 4.9e-77 292.4 332 48.5
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 1.9e-76 290.4 370 45.4
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 7.0e-76 288.5 348 46.8
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 1.6e-75 287.3 365 44.9
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 4.6e-75 285.8 343 47.5
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 1.3e-74 284.3 383 44.4
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.7e-74 283.9 250 60.8
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 1.5e-73 280.8 310 50.3
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 1.5e-73 280.8 316 49.4
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 1.2e-72 277.7 349 45.3
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 2.1e-72 276.9 322 47.2
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.0e-70 270.4 355 46.2
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 2.9e-69 266.5 326 46.6
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 2.9e-69 266.5 326 46.6
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 2.9e-69 266.5 326 46.6
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 4.9e-69 265.8 313 47.0
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 4.9e-69 265.8 341 45.5
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 8.3e-69 265.0 323 47.4
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.4e-68 264.2 349 43.6
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-68 264.2 342 45.9
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 2.4e-68 263.5 354 45.2
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 8.1e-64 248.4 351 41.0
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 1.5e-62 244.2 349 43.0
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 3.4e-62 243.0 313 44.1
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 5.8e-62 242.3 343 43.1
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.8e-56 223.4 386 38.3
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 2.6e-54 216.9 249 45.8
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 7.6e-54 215.3 198 52.5
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 9.9e-54 214.9 325 40.6
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 1.7e-53 214.2 272 43.4
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 8.7e-50 201.8 338 36.1
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 2.4e-47 193.7 326 38.0
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 3.1e-47 193.4 361 38.8
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 2.0e-46 190.7 326 37.7
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 2.6e-46 190.3 264 45.8
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 2.7e-43 180.3 326 36.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 3.3e-41 173.3 141 61.7
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 4.5e-38 162.9 132 58.3
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 4.2e-36 156.4 177 45.8
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 2.5e-33 147.1 191 40.8
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 3.3e-33 146.7 186 41.9
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 4.3e-33 146.4 310 31.3
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 1.8e-31 141.0 151 45.0
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 1.7e-29 134.4 266 32.3
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 7.9e-27 125.6 98 56.1
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 4.1e-23 113.2 90 55.6
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 3.9e-18 96.7 145 39.3
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 8.8e-18 95.5 111 45.0
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 8.8e-18 95.5 111 45.0
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 2.0e-17 94.4 111 45.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 2.0e-17 94.4 111 45.0
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 2.5e-17 94.0 105 41.9
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 2.5e-17 94.0 105 41.9
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 2.5e-17 94.0 111 45.0
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 3.3e-17 93.6 198 33.3
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 4.3e-17 93.2 111 44.1
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 1.3e-16 91.7 92 46.7
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 2.8e-16 90.5 92 51.1
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 1.4e-15 88.2 64 64.1
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 2.6e-14 84.0 93 45.2
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 2.2e-13 80.9 68 55.9
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 3.8e-13 80.1 152 30.9
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 5.0e-13 79.7 98 41.8


User provided reference genes

Program Settings